Files in Sushi

Tools for visualizing genomics data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/Sushi_RNASeq_K562.bedgraph.rda

data/Sushi_hg18_genome.rda

data/Sushi_genes.bed.rda

data/Sushi_transcripts.bed.rda

data/Sushi_ChIPSeq_CTCF.bedgraph.rda

data/Sushi_ChIAPET_pol2.bedpe.rda

data/Sushi_ChIPExo_CTCF.bedgraph.rda

data/Sushi_HiC.matrix.rda

data/Sushi_GWAS.bed.rda

data/Sushi_5C.bedpe.rda

data/datalist

data/Sushi_ChIPSeq_pol2.bedgraph.rda

data/Sushi_DNaseI.bedgraph.rda

data/Sushi_ChIPSeq_pol2.bed.rda

data/Sushi_ChIPSeq_severalfactors.bed.rda

R/convertstrandinfo.R R/plotHic.R R/addlegend.R R/plotManhattan.R R/labelplot.R R/SushiColors.R R/plotGenes.R R/plotBedgraph.R R/plotBedpe.R R/sortChrom.R R/chromOffsets.R R/labelgenome.R R/maptolwd.R R/plotBed.R R/datasetsinfo.R R/Sushi-internal.R R/zoomsregion.R R/maptocolors.R R/zoombox.R R/opaque.R

vignettes/Sushi.Rnw

vignettes/PaperFigure.R vignettes/Figure_1.pdf man/sortChrom.Rd man/maptocolors.Rd man/zoomsregion.Rd man/plotBedgraph.Rd man/Sushi_ChIAPET_pol2.bedpe.Rd man/Sushi_5C.bedpe.Rd man/Sushi_ChIPSeq_severalfactors.bed.Rd man/plotBedpe.Rd man/chromOffsets.Rd man/zoombox.Rd man/plotGenes.Rd man/plotBed.Rd man/opaque.Rd man/plotHic.Rd man/Sushi_hg18_genome.Rd man/convertstrandinfo.Rd man/Sushi_HiC.matrix.Rd man/Sushi_ChIPSeq_pol2.bed.Rd man/plotManhattan.Rd man/Sushi_ChIPSeq_pol2.bedgraph.Rd man/Sushi_DNaseI.bedgraph.Rd man/Sushi_ChIPSeq_CTCF.bedgraph.Rd man/addlegend.Rd man/Sushi_GWAS.bed.Rd man/Sushi_genes.bed.Rd man/Sushi_ChIPExo_CTCF.bedgraph.Rd man/labelgenome.Rd man/SushiColors.Rd man/labelplot.Rd man/Sushi_transcripts.bed.Rd man/Sushi_RNASeq_K562.bedgraph.Rd man/maptolwd.Rd inst/doc/Sushi.R

inst/doc/Sushi.Rnw

inst/doc/Sushi.pdf

Sushi documentation built on Nov. 8, 2020, 7:48 p.m.