SwimR: SwimR: A Suite of Analytical Tools for Quantification of C. elegans Swimming Behavior
Version 1.16.0

SwimR is an R-based suite that calculates, analyses, and plots the frequency of C. elegans swimming behavior over time. It places a particular emphasis on identifying paralysis and quantifying the kinetic elements of paralysis during swimming. Data is input to SwipR from a custom built program that fits a 5 point morphometric spine to videos of single worms swimming in a buffer called Worm Tracker.

Package details

AuthorJing Wang <[email protected]>, Andrew Hardaway <[email protected]> and Bing Zhang <[email protected]>
Bioconductor views Visualization
MaintainerRandy Blakely <[email protected]>
LicenseLGPL-2
Version1.16.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("SwimR")

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SwimR documentation built on Nov. 17, 2017, 11:14 a.m.