API for SynMut
SynMut: Designing Synonymously Mutated Sequences with Different Genomic Signatures
| Global functions | |
|---|---|
| .onAttach | Source code |
| codon.count | Source code Source code |
| codon.mimic | Source code |
| codon.mimic.no.region | Source code |
| codon.mimic.region | Source code |
| codon_dist | Man page |
| codon_dist,ANY-method | Man page |
| codon_mimic | Man page |
| codon_mimic,DNAStringSet,DNAStringSet-method | Man page |
| codon_mimic,regioned_dna,DNAStringSet-method | Man page |
| codon_mimic,regioned_dna,vector-method | Man page |
| codon_random | Man page |
| codon_random,DNAStringSet-method | Man page |
| codon_random,regioned_dna-method | Man page |
| codon_to | Man page |
| codon_to,regioned_dna-method | Man page |
| convert_to_seq | Source code |
| dinu_dist | Man page |
| dinu_dist,ANY-method | Man page |
| dinu_to | Man page |
| dinu_to,regioned_dna-method | Man page |
| dinu_to.keep | Source code |
| dinu_to.not.keep | Source code |
| extract_region | Source code |
| freq | Source code Source code |
| gernerate_rgd | Source code |
| get_cu | Man page |
| get_cu,DNAStringSet-method | Man page |
| get_cu,regioned_dna-method | Man page |
| get_dna | Man page |
| get_dna,regioned_dna-method | Man page |
| get_du | Man page |
| get_du,DNAStringSet-method | Man page |
| get_du,regioned_dna-method | Man page |
| get_freq | Man page |
| get_freq,DNAStringSet-method | Man page |
| get_freq,matrix-method | Man page |
| get_freq,regioned_dna-method | Man page |
| get_freq,vector-method | Man page |
| get_nu | Man page |
| get_nu,DNAStringSet-method | Man page |
| get_nu,regioned_dna-method | Man page |
| get_optimal_codon | Source code |
| get_region | Man page |
| get_region,regioned_dna-method | Man page |
| get_rscu | Man page |
| get_rscu,DNAStringSet-method | Man page |
| get_rscu,regioned_dna-method | Man page |
| input_seq | Man page |
| input_seq,DNAString-method | Man page |
| input_seq,DNAStringSet-method | Man page |
| input_seq,character-method | Man page |
| mut.assign.back | Source code |
| mutation_random_main | Source code |
| region_back | Source code |
| regioned_dna-class | Man page |
| seq_random | Man page |
| seq_random,numeric,numeric-method | Man page |
