TCA.accessors: Accessors to extract slots of a TCA class.

In TCseq: Time course sequencing data analysis

Description

Accessors are provided to extract design, genomicFeature, tcTable, clustResults slots of a TCA class. The design slot stores experimental information of samples/libraries, the genomicFeature slot stores genomic coordinates of features, the tcTable slot stores time couse data as a matrix, where rows are genomic features and columns time points. The clustResults slot stores results of clustering analysis as a clust object.

Usage

## S4 method for signature 'TCA'
design(object)

genomicFeature(object)

tcTable(object)

## S4 method for signature 'TCA'
tcTable(object)

clustResults(object)

## S4 method for signature 'TCA'
clustResults(object)

Arguments

object

TCA object object

Value

design returns a data frame. genomicFeature returns a data frame. tcTable returns a numeric matrix. clustResults returns a clust object, see clust for details.

Author(s)

Mengjun Wu

See Also

clust

Examples

data(tca_ATAC)
genomicFeature(tca_ATAC)
tcTable(tca_ATAC)

TCseq documentation built on Nov. 8, 2020, 5:46 p.m.