Man pages for TFARM
Transcription Factors Association Rules Miner
| DELTA | Contains the delta variations of support, confidence and... |
| distribViz | Boxplots visualization of the Importance Index distribution... |
| heatI | Generates an heatmap visualization of the mean Importance... |
| I_c_2 | Contains the mean Importance Index of pairs of transcription... |
| IComp | Computes the Importance Index of a transcription factor in a... |
| IMP | Contains the mean Importance Index of each co-regulator. |
| imp_FOSL2 | Contains the set of Importance Indexes of FOSL2 in a given... |
| IMP_Z | Contains the Importance Index associated with each... |
| IPCA | Principal Components Analysis for distributions of variations... |
| items | Extracts items in the left-hand-side of an association rule. |
| itemset | Builds the itemset in the left-hand-side of an association... |
| MCF7_chr1 | Contains genomic regions in the first chromosome of the MCF-7... |
| presAbs | Splits a set of transcription factors in 'present' or... |
| p_TFs | Contains co-regulators found in at least one association... |
| r_FOSL2 | Represents an example of rulesTF output, i.e. the subset of... |
| r_noFOSL2 | Represents an example of rulesTF0 output, where the presence... |
| r_TEAD4 | Contains the association rules for the prediction of the... |
| rulesGen | Exctracts relevant association rules. |
| rulesTF | Extracts a subset of rules that contain a certain... |
| rulesTF0 | Substitutes the presence of a transcription factor (or a... |
| search_rule | Finds an association rule in a dataset. |
| TF_Imp | Contains the candidate co-regulators and the number of rules... |
