loadVariantExperiment: loadVariantExperiment to load the GDS back-end...
In VariantExperiment: A RangedSummarizedExperiment Container for VCF/GDS Data with GDS Backend
Description
Usage
Arguments
Value
Examples
View source: R/saveVariantExperiment.R
Description
loadVariantExperiment to load the GDS back-end SummarizedExperiment
object into R console.
Usage
1
Arguments
dir
The directory to save the gds format of the array data,
and the newly generated SummarizedExperiment object with array
data in GDSArray format.
Value
An VariantExperiment object.
Examples
1
2
3
4
5
6
gds <- SeqArray::seqExampleFileName("gds")
## ve <- makeVariantExperimentFromGDS(gds)
## ve1 <- subsetByOverlaps(ve, GRanges("22:1-48958933"))
aa <- tempfile()
## saveVariantExperiment(ve1, dir=aa, replace=TRUE)
## loadVariantExperiment(dir = aa)
VariantExperiment documentation built on April 10, 2021, 6 p.m.
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Description Usage Arguments Value Examples
View source: R/saveVariantExperiment.R
Description
loadVariantExperiment to load the GDS back-end SummarizedExperiment object into R console.
Usage
1 |
Arguments
dir |
The directory to save the gds format of the array data, and the newly generated SummarizedExperiment object with array data in GDSArray format. |
Value
An VariantExperiment object.
Examples
1 2 3 4 5 6 | gds <- SeqArray::seqExampleFileName("gds")
## ve <- makeVariantExperimentFromGDS(gds)
## ve1 <- subsetByOverlaps(ve, GRanges("22:1-48958933"))
aa <- tempfile()
## saveVariantExperiment(ve1, dir=aa, replace=TRUE)
## loadVariantExperiment(dir = aa)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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