dot-gets2: Obtain variances of logged counts.

Description Usage Arguments Value

Description

Obtain variances of logged counts.

Usage

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.gets2(mat, design = model.matrix(mat[1, ] ~ 1), plot = FALSE,
  ebs2 = TRUE, smoothed = FALSE, ...)

Arguments

mat

count matrix; rows are features and columns are samples.

design

model matrix for the count matrix

plot

if the mean-variance trend function (the same as that of voom) needs to be plot.

ebs2

if regularization of variances needs to be performed.

smoothed

TRUE if all the variance estimates must be based on the mean-variance trend function.

...

other parameters

Value

a vector with variance estimates for logged feature-wise counts.


Wrench documentation built on Nov. 8, 2020, 5:45 p.m.