get_unknown_ppi_nodes: get_unknown_ppi_nodes

Description Usage Arguments Value Examples

View source: R/network_plots.R

Description

Get proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Usage

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get_unknown_ppi_nodes(xina_result, cl)

Arguments

xina_result

A list containing XINA network analysis results. See xina_analysis

cl

the clustering number of XINA clustering results. See xina_clustering

Value

A data frame containing proteins with no known interactions within the cluster based on the used protein-protein interaction database source

Examples

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# load XINA example data
data(xina_example)

# load the previously processed XINA analysis results
# if you want to learn how to run 'xina_analysis', please see \link[XINA]{xina_analysis}
data(xina_result_example)

# Extract unknown PPI nodes in the cluster #1
get_unknown_ppi_nodes(xina_result_example, 1)

XINA documentation built on Nov. 8, 2020, 5:32 p.m.