Files in Xeva

Analysis of patient-derived xenograft (PDX) data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/PDXMI.rda

data/repdx.rda

data/brca.rda

R/subset_Xeva.R R/plot_functions.R R/get_model_batch_data.R R/important_functions.R R/create_expDesign_slot.R R/pdx_model_class.R R/access_slot_drug.R R/access_slot_sensitivity.R R/geneDrug_association.R R/access_slot_expDesign.R R/waterfall_plot.R R/expDesign_manuplation.R R/downloadXevaSet.R R/summ_response_Function.R R/response_matrices.R R/access_slot_experiment.R R/access_slot_modToBiobase.R R/access_expressionData_Functions.R R/lmm.R R/XevaSet_Class.R R/mRECIST.R R/access_slot_model.R R/tgi.R R/plot_mRECIST.R R/slope_and_angle.R R/data.R R/create_Experiment_slot.R R/drug_Sensitivity_Signature.R R/auc.R

vignettes/XevaBiblio.bib

vignettes/Xeva.Rnw

vignettes/images/Xeva_batch_2.pdf man/modelInfo.Rd man/AUC.Rd man/plotPDX.Rd man/TGI.Rd man/waterfall.Rd man/drugSensitivitySig.Rd man/dosePlot.Rd man/plotmRECIST.Rd man/drugInform.Rd man/getMolecularProfiles.Rd man/batchInfo.Rd man/selectModelIds.Rd man/response.Rd man/getExperiment.Rd man/addExperimentalDesign.Rd man/summarizeResponse.Rd man/mRECIST.Rd man/lmm.Rd man/createXevaSet.Rd man/angle.Rd man/PDXMI.Rd man/ABC.Rd man/sensitivity.Rd man/slope.Rd man/summarizeMolecularProfiles.Rd man/repdx.Rd man/subsetXeva.Rd man/downloadXevaSet.Rd man/brca.Rd man/setResponse.Rd man/print.modelResponse.Rd man/print.pdxBatch.Rd man/print.batchResponse.Rd inst/doc/Xeva.R

inst/doc/Xeva.Rnw

inst/doc/Xeva.pdf

inst/extdata/rnaseq.rds

inst/extdata/drug.csv

inst/extdata/modelToExpressionMap.csv

inst/extdata/batch_list.rds

inst/extdata/experiments.csv

inst/extdata/model.csv

Xeva documentation built on Nov. 8, 2020, 5:56 p.m.