adSplit: Annotation-Driven Clustering

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Author
Claudio Lottaz, Joern Toedling
Date of publication
None
Maintainer
Claudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de>
License
GPL (>= 2)
Version
1.44.0
URLs

View on Bioconductor

Man pages

adSplit
Annotation-Driven Splits
adSplit-internal
adSplit Internal Function
diana2means
2-Means with Hierarchical Initialization
drawRandomPS
Draw sets of probe-sets
golubKEGGSplits
Examplar splitSet
hist.splitSet
Overview Histogram for splitSets
image.splitSet
Illustrate Split Sets
makeEID2PROBESenv
Generate EID2PROBES environment
print.split
Print Information on Single Splits
print.splitSet
Print Summaries for splitSets
randomDiana2means
Generate null-distributions of DLD-scores

Files in this package

adSplit/DESCRIPTION
adSplit/NAMESPACE
adSplit/R
adSplit/R/adSplit.R
adSplit/R/diana2means.R
adSplit/R/image.splitSet.R
adSplit/build
adSplit/build/vignette.rds
adSplit/data
adSplit/data/golubKEGGSplits.rda
adSplit/inst
adSplit/inst/doc
adSplit/inst/doc/tr_2005_02.R
adSplit/inst/doc/tr_2005_02.Rnw
adSplit/inst/doc/tr_2005_02.pdf
adSplit/man
adSplit/man/adSplit-internal.Rd
adSplit/man/adSplit.Rd
adSplit/man/diana2means.Rd
adSplit/man/drawRandomPS.Rd
adSplit/man/golubKEGGSplits.Rd
adSplit/man/hist.splitSet.Rd
adSplit/man/image.splitSet.Rd
adSplit/man/makeEID2PROBESenv.Rd
adSplit/man/print.split.Rd
adSplit/man/print.splitSet.Rd
adSplit/man/randomDiana2means.Rd
adSplit/src
adSplit/src/adSplit.cpp
adSplit/vignettes
adSplit/vignettes/Makefile
adSplit/vignettes/bcb_logo.pdf
adSplit/vignettes/compdiag.sty
adSplit/vignettes/minerva_bcb.pdf
adSplit/vignettes/tr_2005_02.Rnw