adSplit: Annotation-Driven Clustering

This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("adSplit")
AuthorClaudio Lottaz, Joern Toedling
Bioconductor views Clustering Microarray
Date of publicationNone
MaintainerClaudio Lottaz <Claudio.Lottaz@klinik.uni-regensburg.de>
LicenseGPL (>= 2)
Version1.46.0
http://compdiag.molgen.mpg.de/software/index.shtml

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/adSplit.R R/diana2means.R R/image.splitSet.R
build
build/vignette.rds
data
data/golubKEGGSplits.rda
inst
inst/doc
inst/doc/tr_2005_02.R
inst/doc/tr_2005_02.Rnw
inst/doc/tr_2005_02.pdf
man
man/adSplit-internal.Rd man/adSplit.Rd man/diana2means.Rd man/drawRandomPS.Rd man/golubKEGGSplits.Rd man/hist.splitSet.Rd man/image.splitSet.Rd man/makeEID2PROBESenv.Rd man/print.split.Rd man/print.splitSet.Rd man/randomDiana2means.Rd
src
src/adSplit.cpp
vignettes
vignettes/Makefile
vignettes/bcb_logo.pdf
vignettes/compdiag.sty
vignettes/minerva_bcb.pdf
vignettes/tr_2005_02.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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