spectraCreate: Deconvolute both MS2 and MS1 levels scans adductomics

In adductomicsR: Processing of adductomic mass spectral datasets

Description

Deconvolute both MS2 and MS1 levels scans adductomics

Usage

spectraCreate(MS2file = NULL, TICfilter = 10000, DNF = 2, minInt = 
100, minPeaks = 5)

Arguments

MS2file	character vector of mzXML file locations
TICfilter	numeric minimimum total ion current of an MS/MS scan. Any MS/MS scan below this value will be filtered out (default=0).
DNF	dynamic noise filter minimum signal to noise threshold (default = 2), calculated as the ratio between the linear model predicted intensity value and the actual intensity.
minInt	numeric minimum intensity value
minPeaks	minimum number of signal peaks following dynamic noise filtration (default = 5).

Value

list of MS2 spectra

adductomicsR documentation built on Nov. 8, 2020, 4:49 p.m.