agilp: Agilent expression array processing package

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Author
Benny Chain <b.chain@ucl.ac.uk>
Date of publication
None
Maintainer
Benny Chain <b.chain@ucl.ac.uk>
License
GPL-3
Version
3.6.0

View on Bioconductor

Man pages

AALoess
Normalises a set of gene expression data files using LOESS
AAProcess
Extracts raw expression data from Agilent expression array...
Baseline
Constructs a file with the mean of each probe from a set of...
Equaliser
Trims a set of gene expression data files to include only the...
filenamex
A file name listing utility
IDswop
Mapping expression data across bioinformatic identifiers
Loader
A file choser utility file.

Files in this package

agilp/DESCRIPTION
agilp/NAMESPACE
agilp/R
agilp/R/AALoess.R
agilp/R/AAProcess.R
agilp/R/Baseline.R
agilp/R/Equaliser.R
agilp/R/IDswop.R
agilp/R/Loader.R
agilp/R/filenamex.R
agilp/build
agilp/build/vignette.rds
agilp/inst
agilp/inst/doc
agilp/inst/doc/agilp_manual.R
agilp/inst/doc/agilp_manual.Rnw
agilp/inst/doc/agilp_manual.pdf
agilp/inst/extdata
agilp/inst/extdata/annotations_sample.txt
agilp/inst/extdata/gRaw_arrays_scanner_file1.txt
agilp/inst/extdata/gRaw_arrays_scanner_file2.txt
agilp/inst/extdata/probes.txt
agilp/inst/extdata/rRaw_arrays_scanner_file1.txt
agilp/inst/extdata/rRaw_arrays_scanner_file2.txt
agilp/inst/extdata/raw
agilp/inst/extdata/raw/gRaw_arrays_scanner_file1.txt
agilp/inst/extdata/raw/gRaw_arrays_scanner_file2.txt
agilp/inst/extdata/raw/rRaw_arrays_scanner_file1.txt
agilp/inst/extdata/raw/rRaw_arrays_scanner_file2.txt
agilp/inst/extdata/sample_template.txt
agilp/inst/extdata/scanner
agilp/inst/extdata/scanner/scanner_file_1.txt
agilp/inst/extdata/scanner/scanner_file_2.txt
agilp/inst/extdata/testbase.txt
agilp/inst/input
agilp/inst/input/toberemoved.txt
agilp/inst/input1
agilp/inst/input1/toberemoved.txt
agilp/inst/output
agilp/inst/output/toberemoved.txt
agilp/man
agilp/man/AALoess.Rd
agilp/man/AAProcess.Rd
agilp/man/Baseline.Rd
agilp/man/Equaliser.Rd
agilp/man/IDswop.Rd
agilp/man/Loader.Rd
agilp/man/filenamex.Rd
agilp/vignettes
agilp/vignettes/agilp_manual.Rnw