homoData-class: Class "homoData"

In annotate: Annotation for microarrays

Description

A class to present data for HomologGene data of a matching sequence

Objects from the Class

Objects can be created by calls of the form new("homoData", ...).

Slots

homoOrg:

Object of class "character" the scientific name of the organism of interest

homoLL:

Object of class "numeric" the LocusLink id of the gene of interest

homoType:

Object of class "character" the type of similarity. Valid values include B - a recipiprocal best best between 3 or more organisms, b - a reciprocal best match, and c - a curated homology relationship

homoPS:

Object of class "numeric" percent similarity value

homoURL:

Object of class "character" the URL for curated homology relationship

homoACC:

Object of class "character" the accession number

homoHGID:

Object of class "numeric" the internal HomologGeneID

Methods

homoPS

signature(object = "homoData"): the get function for slot homoPS

homoLL

signature(object = "homoData"): the get function for slot homoLL

homoOrg

signature(object = "homoData"): the get function for slot homoOrg

homoType

signature(object = "homoData"): the get function for slot homoType

homoURL

signature(object = "homoData"): the get function for slot homoURL

homoACC

signature(object = "homoData"): the get function for slot homoACC

homoHGID

signature(object = "homoHGID"): the get function for slot homoHGID

Author(s)

Jianhua Zhang

References

ftp://ftp.ncbi.nih.gov/pub/HomoloGene/README

Examples

    new("homoData", homoPS = 82.3, homoLL = 2324853, homoOrg = "Homo sapins",
homoType = "B", homoURL = "", homoHGID = 12345)

annotate documentation built on Nov. 8, 2020, 8:14 p.m.