inst/doc/anota.R

In anota: ANalysis Of Translational Activity (ANOTA).

### R code from vignette source 'anota.Rnw'

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### code chunk number 1: anota.Rnw:135-142
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##Loading the library and data set, perform quality control and identify significant translational regulation. No RVM is applied in the example.
 library("anota")
 data(anotaDataSet)
 anotaQcOut <- anotaPerformQc(dataT=anotaDataT[1:200,], dataP=anotaDataP[1:200,], phenoVec=anotaPhenoVec, nDfbSimData=500, useProgBar=FALSE)
 anotaResidOut <- anotaResidOutlierTest(anotaQcObj=anotaQcOut, useProgBar=FALSE)
 anotaSigOut <- anotaGetSigGenes(dataT=anotaDataT[1:200,], dataP=anotaDataP[1:200,], phenoVec=anotaPhenoVec, anotaQcObj=anotaQcOut, useRVM=FALSE, useProgBar=FALSE)
anotaSelected <- anotaPlotSigGenes(anotaSigObj=anotaSigOut, selContr=1, maxP=0.1, minSlope=(-0.5), maxSlope=1.5, selDeltaPT=0.5)