API for anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
| Global functions | |
|---|---|
| Anota2seqDataSet | Man page |
| Anota2seqDataSet-class | Man page |
| anota2seq-plots | Man page |
| anota2seqAdjustPvals | Source code |
| anota2seqAdjustPvalsQ | Source code |
| anota2seqAnalyze | Man page |
| anota2seqCalculateDeltaData | Source code |
| anota2seqCalculateFC | Source code |
| anota2seqCheckInput | Source code |
| anota2seqCheckParameter | Source code |
| anota2seqDataSetFromMatrix | Man page Source code |
| anota2seqDataSetFromSE | Man page Source code |
| anota2seqDfbsSummaryFull | Source code |
| anota2seqDfbsSummaryOnly | Source code |
| anota2seqFiltCheckVar | Source code |
| anota2seqGetContrasts | Man page |
| anota2seqGetContrasts,Anota2seqDataSet-method | Man page |
| anota2seqGetCovariates | Man page |
| anota2seqGetCovariates,Anota2seqDataSet-method | Man page |
| anota2seqGetDeltaData | Man page |
| anota2seqGetDeltaData,Anota2seqDataSet-method | Man page |
| anota2seqGetIntercepts | Source code |
| anota2seqGetNormalizedData | Man page |
| anota2seqGetNormalizedData,Anota2seqDataSet-method | Man page |
| anota2seqGetOutput | Man page |
| anota2seqGetOutput,Anota2seqDataSet-method | Man page |
| anota2seqGetQualityControl | Man page |
| anota2seqGetQualityControl,Anota2seqDataSet-method | Man page |
| anota2seqGetResidOutlierTest | Man page |
| anota2seqGetResidOutlierTest,Anota2seqDataSet-method | Man page |
| anota2seqGetSummaryDfb | Source code |
| anota2seqGetThresholds | Man page |
| anota2seqGetThresholds,Anota2seqDataSet-method | Man page |
| anota2seqGetab | Source code |
| anota2seqNormalize | Source code |
| anota2seqPerformQC | Man page Source code |
| anota2seqPerformQcWarnings | Source code |
| anota2seqPerformRVM | Source code |
| anota2seqPlotFC | Man page |
| anota2seqPlotFC,Anota2seqDataSet-method | Man page |
| anota2seqPlotGenes | Man page |
| anota2seqPlotGenes,Anota2seqDataSet-method | Man page |
| anota2seqPlotIGFit | Source code |
| anota2seqPlotIntPvals | Source code |
| anota2seqPlotPvalues | Man page |
| anota2seqPlotPvalues,Anota2seqDataSet-method | Man page |
| anota2seqPlotSingleRegression | Source code |
| anota2seqRNAseqPreProcessing | Source code |
| anota2seqRegModes | Man page Source code |
| anota2seqRemoveZeroSamples | Source code |
| anota2seqResidOutlierPlot | Source code |
| anota2seqResidOutlierPlotAll | Source code |
| anota2seqResidOutlierTest | Man page Source code |
| anota2seqRun | Man page Source code |
| anota2seqSelSigGenes | Man page |
| anota2seqSimDfbs | Source code |
| anota2seqSlopeTest | Source code |
| anota2seq_data | Man page |
| anota2seq_data_P | Man page |
| anota2seq_data_T | Man page |
| anota2seq_pheno_vec | Man page |
| s4MethodChecks | Source code |
| show | Man page |
| show,Anota2seqDataSet-method | Man page |
| showRegModeOutput | Source code |
| showSelectedOutput | Source code |
