Simulated data used to illustrate the anota2seq workflow.
Eight samples were simulated from 2 sample classes ("control" and "treatment"); both total mRNA (anota2seq_data_T) and paired translated mRNA (anota2seq_data_P) are provided together with a sample class vector (anota2seq_pheno_vec).
anota2seq_data_T and anota2seq_data_P are 2 matrices with 10748 rows and 8 columns simulated to represent raw RNAseq counts from 8 samples (4 replicates of each condition) and 10748 mRNAs. Columns are ordered according to the RNA type pairing i.e. column 1 of anota2seq_data_T is from the same sample as column 1 of anota2seq_data_P etc.
These data originate from the study by Oertlin et al. which compared methods for analysis of translatomes quantified by RNAseq.
Oertlin C. et al. Genome-wide analysis of differential translation and differential translational buffering using anota2seq, bioRxiv, 2017.
1 2 3 4 5 6 7 8 9
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.