Man pages for anota2seq
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
| anota2seqAnalyze | Analysis of translational activity |
| anota2seq_data | Sample data set for anota2seq |
| Anota2seqDataSet-class | Anota2seqDataSet class |
| anota2seqDataSetFromMatrix | Anota2seqDataSet constructors. |
| anota2seqGetContrasts | Accessor for the 'contrasts' slot of an Anota2seqDataSet... |
| anota2seqGetCovariates | Accessor for the 'phenoVec' and 'batchVec' slots of an... |
| anota2seqGetDeltaData | Accessor for the fold changes and TE scores stored in the... |
| anota2seqGetNormalizedData | Accessor for the 'normalizedDataP' and 'normalizedDataT'... |
| anota2seqGetOutput | Retrieve output for analyzes stored in the Anota2seqDataSet |
| anota2seqGetQualityControl | Retrieve the anota2seqPerformQC output from the... |
| anota2seqGetResidOutlierTest | Retrieve residOutlierTest |
| anota2seqGetThresholds | Get filtering criteria thresholds |
| anota2seqPerformQC | Perform quality control to ensure that the supplied data set... |
| anota2seq-plots | Visualization of anota2seq results |
| anota2seqRegModes | Categorize genes into regulatory modes of gene expression... |
| anota2seqResidOutlierTest | Test for normality of residuals |
| anota2seqRun | Wrapper for several functions which provide one-step analysis |
| anota2seqSelSigGenes | Select identifiers from the output of 'anota2seqAnalyze'. |
| show-Anota2seqDataSet-method | Show information for an Anota2seqDataSet |
