banocc: Bayesian ANalysis Of Compositional Covariance

BAnOCC is a package designed for compositional data, where each sample sums to one. It infers the approximate covariance of the unconstrained data using a Bayesian model coded with `rstan`. It provides as output the `stanfit` object as well as posterior median and credible interval estimates for each correlation element.

Package details

AuthorEmma Schwager [aut, cre], Curtis Huttenhower [aut]
Bioconductor views Bayesian ImmunoOncology Metagenomics Software
MaintainerGeorge Weingart <george.weingart@gmail.com>, Curtis Huttenhower <chuttenh@hsph.harvard.edu>
LicenseMIT + file LICENSE
Version1.14.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("banocc")

Try the banocc package in your browser

Any scripts or data that you put into this service are public.

banocc documentation built on Nov. 8, 2020, 8:08 p.m.