clearExternalDir: Clear the external installation directory
In basilisk.utils: Basilisk Installation Utilities
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
View source: R/clearExternalDir.R
Description
Clear the external installation directory by removing old Conda instances
installed for different versions of basilisk with the same middle version number
(i.e., same Bioconductor release).
Usage
1
2
3
clearExternalDir()
clearObsoleteDir(path = getExternalDir())
Arguments
path
String containing the path to the latest version of the directory of interest.
Details
clearObsoleteDir can also be applied to the directories for the individual Conda environments,
as the package version is also suffixed onto those directory paths.
This is useful for clearing out obsolete versions of package environments.
Value
For clearExternalDir, all conda instances (and associated environments) of the same Bioconductor release as the current basilisk installation are destroyed.
The same applies for clearObsoleteDir except that the conda instance generated by the latest basilisk installation is retained.
Author(s)
Aaron Lun
See Also
getExternalDir, which determines the location of the external directory.
installConda, for the motivation behind this function.
Examples
1
2
3
# We can't actually run clearExternalDir() here, as it
# relies on basilisk already being installed.
print("dummy test to pass BiocCheck")
basilisk.utils documentation built on Jan. 29, 2021, 2 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also Examples
View source: R/clearExternalDir.R
Description
Clear the external installation directory by removing old Conda instances installed for different versions of basilisk with the same middle version number (i.e., same Bioconductor release).
Usage
1 2 3 | clearExternalDir()
clearObsoleteDir(path = getExternalDir())
|
Arguments
path |
String containing the path to the latest version of the directory of interest. |
Details
clearObsoleteDir can also be applied to the directories for the individual Conda environments,
as the package version is also suffixed onto those directory paths.
This is useful for clearing out obsolete versions of package environments.
Value
For clearExternalDir, all conda instances (and associated environments) of the same Bioconductor release as the current basilisk installation are destroyed.
The same applies for clearObsoleteDir except that the conda instance generated by the latest basilisk installation is retained.
Author(s)
Aaron Lun
See Also
getExternalDir, which determines the location of the external directory.
installConda, for the motivation behind this function.
Examples
1 2 3 | # We can't actually run clearExternalDir() here, as it
# relies on basilisk already being installed.
print("dummy test to pass BiocCheck")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.