API for batchelor
Single-Cell Batch Correction Methods
| Global functions | |
|---|---|
| .accumulate_rowdata | Source code |
| .add.single_sce | Source code |
| .add_out_batches_to_tree | Source code |
| .adjust_shift_variance | Source code |
| .apply_cosine_norm | Source code |
| .average_correction | Source code |
| .binarize_tree | Source code |
| .center_along_batch_vector | Source code |
| .choose_k | Source code |
| .col_subset_to_index | Source code |
| .combine_restrict | Source code |
| .compute_batch_rescaling | Source code |
| .compute_centroids | Source code |
| .compute_correction_vectors | Source code |
| .compute_perbatch_var | Source code |
| .compute_tricube_average | Source code |
| .construct_weight_vector | Source code |
| .convert_to_SCE | Source code |
| .count_mnn_pairs | Source code |
| .create_fresh_combined_sce | Source code |
| .create_tree_predefined | Source code |
| .create_unnamed_coldata | Source code |
| .eliminate_overlaps | Source code |
| .fast_mnn | Source code |
| .fast_mnn_core | Source code |
| .fast_mnn_list | Source code |
| .fast_mnn_single | Source code |
| .fill_tree | Source code |
| .fix_names_in_merge_info | Source code |
| .format_clusters | Source code |
| .full_rank_pca | Source code |
| .get_batch_magnitude | Source code |
| .get_bio_span | Source code |
| .get_list_weights | Source code |
| .get_next_merge | Source code |
| .get_node_data | Source code |
| .get_node_extras | Source code |
| .get_node_index | Source code |
| .get_node_origin | Source code |
| .get_node_restrict | Source code |
| .get_pca_metadata | Source code |
| .identify_failed_batch | Source code |
| .initialize_auto_search | Source code |
| .mnn_correct | Source code |
| .mnn_correct_core | Source code |
| .multi_pca_list | Source code |
| .multi_pca_single | Source code |
| .orthogonalize_other | Source code |
| .pick_best_merge | Source code |
| .prepare_input_data | Source code |
| .process_listed_matrices_for_pca | Source code |
| .process_single_matrix_for_pca | Source code |
| .propagate_to_cells | Source code |
| .reindex_pairings | Source code |
| .rename_output | Source code |
| .rescale_batches | Source code |
| .rescale_size_factors | Source code |
| .restore_original_order | Source code |
| .restricted_mnn | Source code |
| .row_subset_to_index | Source code |
| .run_scaled_SVD | Source code |
| .set_deferred | Source code |
| .smooth_gaussian_from_centroids | Source code |
| .subtract_bio | Source code |
| .tricube_weighted_correction | Source code |
| .unrestrict_indices | Source code |
| .update_remainders | Source code |
| .update_tree | Source code |
| BatchelorParam-class | Man page |
| ClassicMnnParam | Man page Source code |
| ClassicMnnParam-class | Man page |
| FastMnnParam | Man page Source code |
| FastMnnParam-class | Man page |
| MNN_treenode | Source code |
| NoCorrectParam | Man page Source code |
| NoCorrectParam-class | Man page |
| RegressParam | Man page Source code |
| RegressParam-class | Man page |
| RescaleParam | Man page Source code |
| RescaleParam-class | Man page |
| adjust_shift_variance | Source code |
| batchCorrect | Man page |
| batchCorrect,ClassicMnnParam-method | Man page |
| batchCorrect,FastMnnParam-method | Man page |
| batchCorrect,NoCorrectParam-method | Man page |
| batchCorrect,RegressParam-method | Man page |
| batchCorrect,RescaleParam-method | Man page |
| batchelor-restrict | Man page |
| checkBatchConsistency | Man page Source code |
| checkIfSCE | Man page Source code |
| checkRestrictions | Man page Source code |
| clusterMNN | Man page Source code |
| correctExperiments | Man page Source code |
| cosineNorm | Man page Source code |
| divideIntoBatches | Man page Source code |
| fastMNN | Man page Source code |
| findMutualNN | Man page Source code |
| find_mutual_nns | Source code |
| mnnCorrect | Man page Source code |
| multiBatchNorm | Man page Source code |
| multiBatchPCA | Man page Source code |
| noCorrect | Man page Source code |
| reducedMNN | Man page |
| regressBatches | Man page Source code |
| rescaleBatches | Man page Source code |
| smooth_gaussian_kernel | Source code |
