batchCorrect | Batch correction methods |
BatchelorParam | BatchelorParam methods |
batchelor-restrict | Using restriction |
checkInputs | Check batch inputs |
clusterMNN | Cluster-based MNN |
correctExperiments | Correct SingleCellExperiment objects |
cosineNorm | Cosine normalization |
divideIntoBatches | Divide into batches |
fastMNN | Fast mutual nearest neighbors correction |
findMutualNN | Find mutual nearest neighbors |
mnnCorrect | Mutual nearest neighbors correction |
multiBatchNorm | Per-batch scaling normalization |
multiBatchPCA | Multi-batch PCA |
noCorrect | No correction |
reducedMNN | MNN correction in reduced dimensions |
regressBatches | Regress out batch effects |
rescaleBatches | Scale counts across batches |
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