SyntheticControl: Generate synthetic control
In bayNorm: Single-cell RNA sequencing data normalization

Input raw data and a vector of capture efficiencies of cells.

1	SyntheticControl(Data, BETA_vec)

`Data`	A matrix of single-cell expression where rows are genes and columns are samples (cells). `Data` can be of class `SummarizedExperiment` (the assays slot contains the expression matrix and is named "Counts") or just matrix.
`BETA_vec`	A vector of capture efficiencies (probabilities) of cells.

Simulate control data (based on Poisson distribution).

List containing 2D matrix of synthetic control, BETA_vec used and lambda used in rpois.

data("EXAMPLE_DATA_list")
SC_output<-SyntheticControl(Data=
EXAMPLE_DATA_list$inputdata,
BETA_vec = EXAMPLE_DATA_list$inputbeta)

bayNorm documentation built on Nov. 8, 2020, 8:25 p.m.

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README.md Introduction to bayNorm

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