betr-package: Identify differentially expressed genes in microarray...

Description Details Author(s) References See Also Examples

Description

The betr package implements the BETR (Bayesian Estimation of Temporal Regulation) algorithm.

Details

Package: betr
Type: Package
License: LGPL (>= 2.0)
LazyLoad: yes

Author(s)

Martin Aryee Maintainer: <aryee@jhu.edu>

References

Smyth, G. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical applications in genetics and molecular biology (2004) vol. 3, article 3 Tai, Y and Speed, T. A multivariate empirical Bayes statistic for replicated microarray time course data. Annals of Statistics (2006) vol. 34 (5) pp. 2387-2412

See Also

betr

Examples

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library(Biobase)    
data(timeEset)
prob <- betr(timeEset, cond=pData(timeEset)$strain, 
    timepoint=pData(timeEset)$time, replicate=pData(timeEset)$rep, alpha=0.05)
head(prob)

betr documentation built on April 14, 2017, 5:16 a.m.