bgx: Bayesian Gene eXpression

Share:

Bayesian integrated analysis of Affymetrix GeneChips

Author
Ernest Turro, Graeme Ambler, Anne-Mette K Hein
Date of publication
None
Maintainer
Ernest Turro <et341@cam.ac.uk>
License
GPL-2
Version
1.40.0

View on Bioconductor

Man pages

analysis.bgx
Analyse BGX output.
bgx
Fully Bayesian integrated approach to the analysis of...
mcmc.bgx
Internal wrapper function for calling the bgx C++ function.
readOutput.bgx
Read in the output from a BGX run.
saveAffinityPlot.bgx
Save a plot of affinity categorisation.
setupVars.bgx
Initialise variables needed to run BGX simulation.

Files in this package

bgx/COPYING
bgx/DESCRIPTION
bgx/NAMESPACE
bgx/R
bgx/R/analysis.bgx.R
bgx/R/bgx.R
bgx/R/mcmc.bgx.R
bgx/R/saveAffinityPlot.bgx.R
bgx/R/setupVars.bgx.R
bgx/R/standalone.bgx.R
bgx/aclocal.m4
bgx/boostIncl.tar.gz
bgx/build
bgx/build/vignette.rds
bgx/config.guess
bgx/config.sub
bgx/configure
bgx/configure.ac
bgx/configure.win
bgx/inst
bgx/inst/doc
bgx/inst/doc/bgx.R
bgx/inst/doc/bgx.Rnw
bgx/inst/doc/bgx.pdf
bgx/install-sh
bgx/man
bgx/man/analysis.bgx.Rd
bgx/man/bgx.Rd
bgx/man/mcmc.bgx.Rd
bgx/man/readOutput.bgx.Rd
bgx/man/saveAffinityPlot.bgx.Rd
bgx/man/setupVars.bgx.Rd
bgx/missing
bgx/src
bgx/src/Makefile.standalone
bgx/src/Makevars
bgx/src/Makevars.in
bgx/src/Makevars.win
bgx/src/TierQuan.hh
bgx/src/bgx.cc
bgx/src/bgx.hh
bgx/src/bgx_frontend.cc
bgx/src/bgx_updates.hh
bgx/src/m4
bgx/src/m4/ax_boost.m4
bgx/src/m4/ax_cflags_gcc_option.m4
bgx/src/m4/ax_check_compiler_flags.m4
bgx/src/m4/ax_compiler_vendor.m4
bgx/src/m4/ax_gcc_archflag.m4
bgx/src/m4/ax_gcc_x86_cpuid.m4
bgx/src/pnorm.hh
bgx/src/qnorm.c
bgx/src/qnorm.h
bgx/src/rand.hh
bgx/src/rundir.cc
bgx/src/rundir.hh
bgx/src/rwm.hh
bgx/src/sokal.cc
bgx/src/sokal.hh
bgx/vignettes
bgx/vignettes/bgx.Rnw