exportFASTA: Exports getSequence results to FASTA format
In biomaRt: Interface to BioMart databases (i.e. Ensembl)
Description
Usage
Arguments
Author(s)
Examples
Description
Exports getSequence results to FASTA format
Usage
1
exportFASTA(sequences, file)
Arguments
sequences
A data.frame that was the output of the getSequence function
file
File to which you want to write the data
Author(s)
Steffen Durinck
Examples
1
2
3
4
5
6
7
8
if(interactive()){
mart <- useMart("ensembl", dataset="hsapiens_gene_ensembl")
#seq<-getSequence(chromosome=c(2,2),start=c(100000,30000),end=c(100300,30500),mart=mart)
#exportFASTA(seq,file="test.fasta")
martDisconnect(mart = mart)
}
biomaRt documentation built on Feb. 11, 2021, 2:01 a.m.
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Description Usage Arguments Author(s) Examples
Description
Exports getSequence results to FASTA format
Usage
1 | exportFASTA(sequences, file)
|
Arguments
sequences |
A data.frame that was the output of the getSequence function |
file |
File to which you want to write the data |
Author(s)
Steffen Durinck
Examples
1 2 3 4 5 6 7 8 | if(interactive()){
mart <- useMart("ensembl", dataset="hsapiens_gene_ensembl")
#seq<-getSequence(chromosome=c(2,2),start=c(100000,30000),end=c(100300,30500),mart=mart)
#exportFASTA(seq,file="test.fasta")
martDisconnect(mart = mart)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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