groupZeros: Group Zero Operations
In bnbc: Bandwise normalization and batch correction of Hi-C data
Description
Usage
Arguments
Details
Value
See Also
Examples
Description
These functions find and remove rows in the set of contact matrices
for which all elements in the row are 0 in all samples.
Usage
1
2
getGroupZeros(cg)
dropGroupZeros(cg, g0s)
Arguments
cg
A ContactGroup object.
g0s
A list of elements identified as group zeros.
Details
Group zeros are those rows for which all elements of the row in all
samples are 0. These can impact estimation of features such as A/B
compartment status and so should be removed for many analyses.
Value
A ContactGroup object with the group zeros removed from all rows in
all contact matrices.
See Also
ContactGroup
Examples
1
2
3
data(cgEx)
g0s <- getGroupZeros(cgEx)
cgEx <- dropGroupZeros(cgEx, g0s)
bnbc documentation built on Nov. 8, 2020, 8:15 p.m.
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Description Usage Arguments Details Value See Also Examples
Description
These functions find and remove rows in the set of contact matrices for which all elements in the row are 0 in all samples.
Usage
1 2 | getGroupZeros(cg)
dropGroupZeros(cg, g0s)
|
Arguments
cg |
A ContactGroup object. |
g0s |
A list of elements identified as group zeros. |
Details
Group zeros are those rows for which all elements of the row in all samples are 0. These can impact estimation of features such as A/B compartment status and so should be removed for many analyses.
Value
A ContactGroup object with the group zeros removed from all rows in all contact matrices.
See Also
ContactGroup
Examples
1 2 3 | data(cgEx)
g0s <- getGroupZeros(cgEx)
cgEx <- dropGroupZeros(cgEx, g0s)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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