R/cBioPortalData-pkg.R

In cBioPortalData: Exposes and makes available data from the cBioPortal web resources

#' @importFrom S4Vectors isSingleString metadata metadata<- SimpleList DataFrame
#' @importFrom SummarizedExperiment SummarizedExperiment rowData rowData<-
#' @importFrom GenomicRanges makeGRangesListFromDataFrame
#' @importFrom GenomeInfoDb genome genome<-
#' @importFrom readr read_tsv type_convert
#' @importFrom MultiAssayExperiment MultiAssayExperiment ExperimentList
#' @importFrom TCGAutils generateMap TCGAbarcode findGRangesCols
#' @import RTCGAToolbox
#' @importFrom BiocFileCache BiocFileCache bfcquery bfcnew bfcinfo bfcadd
#' bfcneedsupdate bfcdownload bfcrpath bfcremove bfccache bfcupdate
#' @importFrom methods as is
#' @importFrom stats na.omit setNames
#' @importFrom utils data download.file untar
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