plot_pca: Plots PCA of all features. Colors high and low quality cells...

In cellity: Quality Control for Single-Cell RNA-seq Data

Description

Plots PCA of all features. Colors high and low quality cells based on outlier detection.

Usage

plot_pca(features, annot, pca, col, output_file)

Arguments

features	Input dataset containing features (cell x features)
annot	Matrix annotation of each cell
pca	PCA of features
col	color code indicating what color high and what low quality cells
output_file	where plot is stored

Details

This function plots PCA of all features + most informative features

Value

Plots of PCA

cellity documentation built on Nov. 8, 2020, 6:11 p.m.