cghMCR: Find chromosome regions showing common gains/losses

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

AuthorJ. Zhang and B. Feng
Date of publicationNone
MaintainerJ. Zhang <jzhang@jimmy.harvard.edu>
LicenseLGPL
Version1.32.0

View on Bioconductor

Functions

cghMCR Man page
cghMCR-class Man page
colnames-methods Man page
colnames,SGOL-method Man page
getSegments Man page
getSegments,marrayNorm-method Man page
getSegments,marrayRaw-method Man page
gol Man page
gol,SGOL-method Man page
MCR Man page
MCR,cghMCR-method Man page
mergeMCRProbes Man page
[-methods Man page
method,SGOL-method Man page
plot Man page
plot,ANY-method Man page
plot.DNAcopy Man page
plot,methods Man page
plot,SGOL,ANY-method Man page
plot,SGOL-method Man page
rownames-methods Man page
rownames,SGOL-method Man page
segData Man page
SGOL Man page
SGOL-class Man page
[,SGOL-method Man page
threshold,SGOL-method Man page

Files

cghMCR/DESCRIPTION
cghMCR/NAMESPACE
cghMCR/NAMESPACEBACK
cghMCR/R
cghMCR/R/cghMCR.R cghMCR/R/mcrFunctions.R
cghMCR/build
cghMCR/build/vignette.rds
cghMCR/data
cghMCR/data/segData.rda
cghMCR/inst
cghMCR/inst/doc
cghMCR/inst/doc/findMCR.R
cghMCR/inst/doc/findMCR.Rnw
cghMCR/inst/doc/findMCR.pdf
cghMCR/inst/sampleData
cghMCR/inst/sampleData/TCGA-06-0881-01A-02D-0387-02-short.txt
cghMCR/inst/sampleData/TCGA-12-0818-01A-01D-0387-02-short.txt
cghMCR/inst/sampleData/TCGA-12-0827-01A-01D-0387-02-short.txt
cghMCR/man
cghMCR/man/SGOL-class.Rd cghMCR/man/cghMCR-class.Rd cghMCR/man/cghMCR.Rd cghMCR/man/mergeMCRProbes.Rd cghMCR/man/methods.Rd cghMCR/man/plot.DNAcopy.Rd
cghMCR/vignettes
cghMCR/vignettes/findMCR.Rnw
cghMCR/vignettes/segplot.eps
cghMCR/vignettes/segplot.png
cghMCR/vignettes/sgolPlot.eps
cghMCR/vignettes/sgolPlot.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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