chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author
Jan Janecka, Ing., Mgr. CEITEC Masaryk University
Date of publication
None
Maintainer
Jan Janecka <jan.janecka@ceitec.muni.cz>
License
GPL-3
Version
2.4.0
URLs

View on Bioconductor

Man pages

chromDraw
Main chromDraw function. This R function calls the main C++...
chromDrawGR
Function chromDrawGR uses Genomic Ranges as input data...
chromDraw-package
chromDraw - simple karyotype visualization tool.
convertInputColors
The R function for converting the data frame with colors to...
convertInputData
The R function for converting Genomic Ranges data structure...
main_chromDraw
The main chromDraw function, that controls all other C++...

Files in this package

chromDraw/DESCRIPTION
chromDraw/NAMESPACE
chromDraw/NEWS
chromDraw/R
chromDraw/R/RcppExports.R
chromDraw/R/chromDraw.R
chromDraw/R/chromDrawGR.R
chromDraw/build
chromDraw/build/vignette.rds
chromDraw/inst
chromDraw/inst/CITATION
chromDraw/inst/doc
chromDraw/inst/doc/chromDraw.R
chromDraw/inst/doc/chromDraw.Rnw
chromDraw/inst/doc/chromDraw.pdf
chromDraw/inst/extdata
chromDraw/inst/extdata/Ack_and_Stenopetalum_nutans.txt
chromDraw/inst/extdata/bed.bed
chromDraw/inst/extdata/default_colors.txt
chromDraw/man
chromDraw/man/chromDraw-package.Rd
chromDraw/man/chromDraw.Rd
chromDraw/man/chromDrawGR.Rd
chromDraw/man/convertInputColors.Rd
chromDraw/man/convertInputData.Rd
chromDraw/man/main_chromDraw.Rd
chromDraw/src
chromDraw/src/Makevars
chromDraw/src/Makevars.win
chromDraw/src/R_init_chromDraw.cpp
chromDraw/src/RcppExports.cpp
chromDraw/src/chromDraw.cpp
chromDraw/src/chromDrawCPP
chromDraw/src/chromDrawCPP/canvas.cpp
chromDraw/src/chromDrawCPP/canvas.h
chromDraw/src/chromDrawCPP/chBlock.cpp
chromDraw/src/chromDrawCPP/chBlock.h
chromDraw/src/chromDrawCPP/chCentromere.cpp
chromDraw/src/chromDrawCPP/chCentromere.h
chromDraw/src/chromDrawCPP/charsLenghts.h
chromDraw/src/chromDrawCPP/chromosome.cpp
chromDraw/src/chromDrawCPP/chromosome.h
chromDraw/src/chromDrawCPP/chromosomeElement.cpp
chromDraw/src/chromDrawCPP/chromosomeElement.h
chromDraw/src/chromDrawCPP/chromosomeMark.cpp
chromDraw/src/chromDrawCPP/chromosomeMark.h
chromDraw/src/chromDrawCPP/chromosomeSign.cpp
chromDraw/src/chromDrawCPP/chromosomeSign.h
chromDraw/src/chromDrawCPP/color.cpp
chromDraw/src/chromDrawCPP/color.h
chromDraw/src/chromDrawCPP/colorPalette.cpp
chromDraw/src/chromDrawCPP/colorPalette.h
chromDraw/src/chromDrawCPP/getOpts.cpp
chromDraw/src/chromDrawCPP/getOpts.h
chromDraw/src/chromDrawCPP/ideogram.cpp
chromDraw/src/chromDrawCPP/ideogram.h
chromDraw/src/chromDrawCPP/karyotype.cpp
chromDraw/src/chromDrawCPP/karyotype.h
chromDraw/src/chromDrawCPP/markSign.cpp
chromDraw/src/chromDrawCPP/markSign.h
chromDraw/src/chromDrawCPP/parameters.cpp
chromDraw/src/chromDrawCPP/parameters.h
chromDraw/src/chromDrawCPP/parsing.h
chromDraw/src/libBoard
chromDraw/src/libBoard/include
chromDraw/src/libBoard/include/Board.h
chromDraw/src/libBoard/include/board
chromDraw/src/libBoard/include/board/Color.h
chromDraw/src/libBoard/include/board/PSFonts.h
chromDraw/src/libBoard/include/board/Path.h
chromDraw/src/libBoard/include/board/Point.h
chromDraw/src/libBoard/include/board/Rect.h
chromDraw/src/libBoard/include/board/ShapeList.h
chromDraw/src/libBoard/include/board/ShapeList.ih
chromDraw/src/libBoard/include/board/Shapes.h
chromDraw/src/libBoard/include/board/Shapes.ih
chromDraw/src/libBoard/include/board/Tools.h
chromDraw/src/libBoard/include/board/Tools.ih
chromDraw/src/libBoard/include/board/Transforms.h
chromDraw/src/libBoard/include/board/Transforms.ih
chromDraw/src/libBoard/src
chromDraw/src/libBoard/src/Board.cpp
chromDraw/src/libBoard/src/Color.cpp
chromDraw/src/libBoard/src/PSFonts.cpp
chromDraw/src/libBoard/src/Path.cpp
chromDraw/src/libBoard/src/Rect.cpp
chromDraw/src/libBoard/src/ShapeList.cpp
chromDraw/src/libBoard/src/Shapes.cpp
chromDraw/src/libBoard/src/Tools.cpp
chromDraw/src/libBoard/src/Transforms.cpp
chromDraw/vignettes
chromDraw/vignettes/ACKlinear.png
chromDraw/vignettes/algorithm2e.sty
chromDraw/vignettes/chromDraw.Rnw
chromDraw/vignettes/chromDraw.bib
chromDraw/vignettes/circular.png