chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Version 2.6.0

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

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AuthorJan Janecka, Ing., Mgr. CEITEC Masaryk University
Bioconductor views Software
Date of publicationNone
MaintainerJan Janecka <jan.janecka@ceitec.muni.cz>
LicenseGPL-3
Version2.6.0
URL www.plantcytogenomics.org/chromDraw
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")

Man pages

chromDraw: Main chromDraw function. This R function calls the main C++...
chromDrawGR: Function chromDrawGR uses Genomic Ranges as input data...
chromDraw-package: chromDraw - simple karyotype visualization tool.
convertInputColors: The R function for converting the data frame with colors to...
convertInputData: The R function for converting Genomic Ranges data structure...
main_chromDraw: The main chromDraw function, that controls all other C++...

Functions

chromDraw Man page Source code
chromDraw-package Man page
chromDrawGR Man page Source code
convertInputColors Man page Source code
convertInputData Man page Source code
main_chromDraw Man page Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/RcppExports.R
R/chromDraw.R
R/chromDrawGR.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/chromDraw.R
inst/doc/chromDraw.Rnw
inst/doc/chromDraw.pdf
inst/extdata
inst/extdata/Ack_and_Stenopetalum_nutans.txt
inst/extdata/bed.bed
inst/extdata/default_colors.txt
man
man/chromDraw-package.Rd
man/chromDraw.Rd
man/chromDrawGR.Rd
man/convertInputColors.Rd
man/convertInputData.Rd
man/main_chromDraw.Rd
src
src/Makevars
src/Makevars.win
src/R_init_chromDraw.cpp
src/RcppExports.cpp
src/chromDraw.cpp
src/chromDrawCPP
src/chromDrawCPP/canvas.cpp
src/chromDrawCPP/canvas.h
src/chromDrawCPP/chBlock.cpp
src/chromDrawCPP/chBlock.h
src/chromDrawCPP/chCentromere.cpp
src/chromDrawCPP/chCentromere.h
src/chromDrawCPP/charsLenghts.h
src/chromDrawCPP/chromosome.cpp
src/chromDrawCPP/chromosome.h
src/chromDrawCPP/chromosomeElement.cpp
src/chromDrawCPP/chromosomeElement.h
src/chromDrawCPP/chromosomeMark.cpp
src/chromDrawCPP/chromosomeMark.h
src/chromDrawCPP/chromosomeSign.cpp
src/chromDrawCPP/chromosomeSign.h
src/chromDrawCPP/color.cpp
src/chromDrawCPP/color.h
src/chromDrawCPP/colorPalette.cpp
src/chromDrawCPP/colorPalette.h
src/chromDrawCPP/getOpts.cpp
src/chromDrawCPP/getOpts.h
src/chromDrawCPP/ideogram.cpp
src/chromDrawCPP/ideogram.h
src/chromDrawCPP/karyotype.cpp
src/chromDrawCPP/karyotype.h
src/chromDrawCPP/markSign.cpp
src/chromDrawCPP/markSign.h
src/chromDrawCPP/parameters.cpp
src/chromDrawCPP/parameters.h
src/chromDrawCPP/parsing.h
src/libBoard
src/libBoard/include
src/libBoard/include/Board.h
src/libBoard/include/board
src/libBoard/include/board/Color.h
src/libBoard/include/board/PSFonts.h
src/libBoard/include/board/Path.h
src/libBoard/include/board/Point.h
src/libBoard/include/board/Rect.h
src/libBoard/include/board/ShapeList.h
src/libBoard/include/board/ShapeList.ih
src/libBoard/include/board/Shapes.h
src/libBoard/include/board/Shapes.ih
src/libBoard/include/board/Tools.h
src/libBoard/include/board/Tools.ih
src/libBoard/include/board/Transforms.h
src/libBoard/include/board/Transforms.ih
src/libBoard/src
src/libBoard/src/Board.cpp
src/libBoard/src/Color.cpp
src/libBoard/src/PSFonts.cpp
src/libBoard/src/Path.cpp
src/libBoard/src/Rect.cpp
src/libBoard/src/ShapeList.cpp
src/libBoard/src/Shapes.cpp
src/libBoard/src/Tools.cpp
src/libBoard/src/Transforms.cpp
vignettes
vignettes/ACKlinear.png
vignettes/algorithm2e.sty
vignettes/chromDraw.Rnw
vignettes/chromDraw.bib
vignettes/circular.png
chromDraw documentation built on May 20, 2017, 10:36 p.m.