chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("chromDraw")
AuthorJan Janecka, Ing., Mgr. CEITEC Masaryk University
Bioconductor views Software
Date of publicationNone
MaintainerJan Janecka <jan.janecka@ceitec.muni.cz>
LicenseGPL-3
Version2.4.0
www.plantcytogenomics.org/chromDraw

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/RcppExports.R R/chromDraw.R R/chromDrawGR.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/chromDraw.R
inst/doc/chromDraw.Rnw
inst/doc/chromDraw.pdf
inst/extdata
inst/extdata/Ack_and_Stenopetalum_nutans.txt
inst/extdata/bed.bed
inst/extdata/default_colors.txt
man
man/chromDraw-package.Rd man/chromDraw.Rd man/chromDrawGR.Rd man/convertInputColors.Rd man/convertInputData.Rd man/main_chromDraw.Rd
src
src/Makevars
src/Makevars.win
src/R_init_chromDraw.cpp
src/RcppExports.cpp
src/chromDraw.cpp
src/chromDrawCPP
src/chromDrawCPP/canvas.cpp
src/chromDrawCPP/canvas.h
src/chromDrawCPP/chBlock.cpp
src/chromDrawCPP/chBlock.h
src/chromDrawCPP/chCentromere.cpp
src/chromDrawCPP/chCentromere.h
src/chromDrawCPP/charsLenghts.h
src/chromDrawCPP/chromosome.cpp
src/chromDrawCPP/chromosome.h
src/chromDrawCPP/chromosomeElement.cpp
src/chromDrawCPP/chromosomeElement.h
src/chromDrawCPP/chromosomeMark.cpp
src/chromDrawCPP/chromosomeMark.h
src/chromDrawCPP/chromosomeSign.cpp
src/chromDrawCPP/chromosomeSign.h
src/chromDrawCPP/color.cpp
src/chromDrawCPP/color.h
src/chromDrawCPP/colorPalette.cpp
src/chromDrawCPP/colorPalette.h
src/chromDrawCPP/getOpts.cpp
src/chromDrawCPP/getOpts.h
src/chromDrawCPP/ideogram.cpp
src/chromDrawCPP/ideogram.h
src/chromDrawCPP/karyotype.cpp
src/chromDrawCPP/karyotype.h
src/chromDrawCPP/markSign.cpp
src/chromDrawCPP/markSign.h
src/chromDrawCPP/parameters.cpp
src/chromDrawCPP/parameters.h
src/chromDrawCPP/parsing.h
src/libBoard
src/libBoard/include
src/libBoard/include/Board.h
src/libBoard/include/board
src/libBoard/include/board/Color.h
src/libBoard/include/board/PSFonts.h
src/libBoard/include/board/Path.h
src/libBoard/include/board/Point.h
src/libBoard/include/board/Rect.h
src/libBoard/include/board/ShapeList.h
src/libBoard/include/board/ShapeList.ih
src/libBoard/include/board/Shapes.h
src/libBoard/include/board/Shapes.ih
src/libBoard/include/board/Tools.h
src/libBoard/include/board/Tools.ih
src/libBoard/include/board/Transforms.h
src/libBoard/include/board/Transforms.ih
src/libBoard/src
src/libBoard/src/Board.cpp
src/libBoard/src/Color.cpp
src/libBoard/src/PSFonts.cpp
src/libBoard/src/Path.cpp
src/libBoard/src/Rect.cpp
src/libBoard/src/ShapeList.cpp
src/libBoard/src/Shapes.cpp
src/libBoard/src/Tools.cpp
src/libBoard/src/Transforms.cpp
vignettes
vignettes/ACKlinear.png
vignettes/algorithm2e.sty
vignettes/chromDraw.Rnw
vignettes/chromDraw.bib
vignettes/circular.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

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