clonotypeR: High throughput analysis of T cell antigen receptor sequences
Version 1.16.0

High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.

Getting started

Package details

AuthorCharles Plessy <[email protected]>
Bioconductor views Sequencing
MaintainerCharles Plessy <[email protected]>
Licensefile LICENSE
Version1.16.0
URL http://clonotyper.branchable.com/
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("clonotypeR")

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clonotypeR documentation built on Nov. 17, 2017, 11:57 a.m.