clonotypeR: High throughput analysis of T cell antigen receptor sequences

High throughput analysis of T cell antigen receptor sequences The genes encoding T cell receptors are created by somatic recombination, generating an immense combination of V, (D) and J segments. Additional processes during the recombination create extra sequence diversity between the V an J segments. Collectively, this hyper-variable region is called the CDR3 loop. The purpose of this package is to process and quantitatively analyse millions of V-CDR3-J combination, called clonotypes, from multiple sequence libraries.

Getting started

Package details

AuthorCharles Plessy <>
Bioconductor views Sequencing
MaintainerCharles Plessy <>
Licensefile LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


Try the clonotypeR package in your browser

Any scripts or data that you put into this service are public.

clonotypeR documentation built on Nov. 8, 2020, 6:51 p.m.