clst: Classification by local similarity threshold

Package for modified nearest-neighbor classification based on calculation of a similarity threshold distinguishing within-group from between-group comparisons.

Author
Noah Hoffman
Date of publication
None
Maintainer
Noah Hoffman <ngh2@uw.edu>
License
GPL-3
Version
1.22.0

View on Bioconductor

Man pages

actino
Actinomyces data set
bvseqs
BV reference set.
classify
classify
clst-package
Classification by local similarity threshold
findThreshold
findThreshold
plotDistances
Visualize results of 'link{findThreshold}'
printClst
Print a summary of the classifier output.
scaleDistPlot
Annotated multidimensional scaling plots.
strep
Streptococcus data set.

Files in this package

clst/DESCRIPTION
clst/NAMESPACE
clst/R
clst/R/classify.R
clst/R/findThreshold.R
clst/R/partition.R
clst/R/scaleDistPlot.R
clst/R/utils.R
clst/build
clst/build/vignette.rds
clst/data
clst/data/actino.rda
clst/data/bvseqs.rda
clst/data/strep.rda
clst/devmakefile
clst/inst
clst/inst/doc
clst/inst/doc/clstDemo.R
clst/inst/doc/clstDemo.Rnw
clst/inst/doc/clstDemo.pdf
clst/man
clst/man/actino.Rd
clst/man/bvseqs.Rd
clst/man/classify.Rd
clst/man/clst-package.Rd
clst/man/findThreshold.Rd
clst/man/plotDistances.Rd
clst/man/printClst.Rd
clst/man/scaleDistPlot.Rd
clst/man/strep.Rd
clst/tests
clst/tests/runalltests.R
clst/tests/runfile.sh
clst/tests/unit
clst/tests/unit/Makefile
clst/tests/unit/README.txt
clst/tests/unit/classifier_test.R
clst/tests/unit/classifyIter_test.R
clst/tests/unit/classify_test.R
clst/tests/unit/data_test.R
clst/tests/unit/dependencies_test.R
clst/tests/unit/findThreshold_test.R
clst/tests/unit/partition_test.R
clst/tests/unit/print_test.R
clst/tests/unit/setup.R
clst/vignettes
clst/vignettes/clstDemo.Rnw
clst/vignettes/devmakefile
clst/vignettes/matchtypes.pdf