coGPS: cancer outlier Gene Profile Sets

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Gene Set Enrichment Analysis of P-value based statistics for outlier gene detection in dataset merged from multiple studies

Author
Yingying Wei, Michael Ochs
Date of publication
None
Maintainer
Yingying Wei <ywei@jhsph.edu>
License
GPL-2
Version
1.18.0

View on Bioconductor

Man pages

coGPS-internal
coGPS package internal function.
coGPS-package
Cancer Outlier Gene Profile Sets
PatientSpecificGeneList
Patient Specific outlier gene list
PCOPA
P-value based outlier gene detection
permCOPA
Calculate PCOPA value for permuations
PlotTopPCOPA
Plot expression patterns of top ranked genes.
SampleData
Sample Data for coGPS

Files in this package

coGPS/DESCRIPTION
coGPS/NAMESPACE
coGPS/R
coGPS/R/coGPS.R
coGPS/build
coGPS/build/vignette.rds
coGPS/data
coGPS/data/CNV_classlab_matched.txt.gz
coGPS/data/CNV_exprs_matched.txt.gz
coGPS/data/Exon_classlab_matched.txt.gz
coGPS/data/Exon_exprs_matched.txt.gz
coGPS/data/Methy_classlab_matched.txt.gz
coGPS/data/Methy_exprs_matched.txt.gz
coGPS/data/datalist
coGPS/data/human_c1.rdata
coGPS/inst
coGPS/inst/CITATION
coGPS/inst/NEWS
coGPS/inst/doc
coGPS/inst/doc/coGPS.R
coGPS/inst/doc/coGPS.Rnw
coGPS/inst/doc/coGPS.pdf
coGPS/man
coGPS/man/PCOPA.Rd
coGPS/man/PatientSpecificGeneList.Rd
coGPS/man/PlotTopPCOPA.Rd
coGPS/man/SampleData.Rd
coGPS/man/coGPS-internal.Rd
coGPS/man/coGPS-package.Rd
coGPS/man/permCOPA.Rd
coGPS/vignettes
coGPS/vignettes/coGPS.Rnw