compcodeR: RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods

This package provides extensive functionality for comparing results obtained by different methods for differential expression analysis of RNAseq data. It also contains functions for simulating count data. Finally, it provides convenient interfaces to several packages for performing the differential expression analysis. These can also be used as templates for setting up and running a user-defined differential analysis workflow within the framework of the package.

Package details

AuthorCharlotte Soneson [aut, cre] (<>)
Bioconductor views DifferentialExpression ImmunoOncology RNASeq
MaintainerCharlotte Soneson <>
LicenseGPL (>= 2)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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compcodeR documentation built on Nov. 10, 2020, 2 a.m.