MultiMeasure-class: Multi-platform genomic measurements across the same samples -...

In consensus: Cross-platform consensus analysis of genomic measurements via interlaboratory testing method

Description

An S4 class that stores normalised matched genomic data from multiple platforms and/or laboratory conditions (e.g. from microarrays, RNA-Seq and other sequencing assays).

List Components

This class has two slots, names and data.

names:

character vector contains the names of each data type (e.g. RNA-Seq, Agilent etc.). Must be the same length as data.

data:

list of numeric matrices of identical dim, rownames and colnames where each matrix contains the measurements from the platform/condition described in names. Rows of each matrix correspond to genomic features and columns to samples. Must be the same length as names.

Methods

MultiMeasure objects have a show method that describes the dimensions of the data, in the form: MultiMeasure object with i platforms/conditions, j samples and k measured loci.

Author(s)

Tim Peters <[e-mail]>

See Also

MultiMeasure constructs MultiMeasure objects.

consensus documentation built on Nov. 8, 2020, 8:32 p.m.