get.helland.subtypes: Get ovarian cancer subtypes as defined by Helland et al.,...
In consensusOV: Gene expression-based subtype classification for high-grade serous ovarian cancer
Description
Usage
Arguments
Value
References
Examples
View source: R/get.helland.subtypes.R
Description
Get ovarian cancer subtypes as defined by Helland et al., 2011
Usage
1
get.helland.subtypes(expression.matrix, entrez.ids)
Arguments
expression.matrix
A matrix of gene expression values with rows as
genes, columns as samples.
entrez.ids
A vector of Entrez Gene IDs, corresponding to the rows of
expression.matrix
Value
A list with first value Helland.subtypes containing a factor
of subtype names; and second value subtype.scores containing a matrix
of subtype scores
References
Helland et al. Deregulation of MYCN, LIN28B and LET7 in a
molecular subtype of aggressive high-grade serous ovarian cancers.
PloS one (2011).
Examples
1
2
3
4
5
library(Biobase)
data(GSE14764.eset)
expression.matrix <- exprs(GSE14764.eset)
entrez.ids <- as.character(fData(GSE14764.eset)$EntrezGene.ID)
get.helland.subtypes(expression.matrix, entrez.ids)
consensusOV documentation built on Nov. 8, 2020, 7:06 p.m.
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Description Usage Arguments Value References Examples
View source: R/get.helland.subtypes.R
Description
Get ovarian cancer subtypes as defined by Helland et al., 2011
Usage
1 | get.helland.subtypes(expression.matrix, entrez.ids)
|
Arguments
expression.matrix |
A matrix of gene expression values with rows as genes, columns as samples. |
entrez.ids |
A vector of Entrez Gene IDs, corresponding to the rows of
|
Value
A list with first value Helland.subtypes containing a factor
of subtype names; and second value subtype.scores containing a matrix
of subtype scores
References
Helland et al. Deregulation of MYCN, LIN28B and LET7 in a molecular subtype of aggressive high-grade serous ovarian cancers. PloS one (2011).
Examples
1 2 3 4 5 | library(Biobase)
data(GSE14764.eset)
expression.matrix <- exprs(GSE14764.eset)
entrez.ids <- as.character(fData(GSE14764.eset)$EntrezGene.ID)
get.helland.subtypes(expression.matrix, entrez.ids)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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