daMA: Efficient design and analysis of factorial two-colour microarray data

This package contains functions for the efficient design of factorial two-colour microarray experiments and for the statistical analysis of factorial microarray data. Statistical details are described in Bretz et al. (2003, submitted)

Author
Jobst Landgrebe <jlandgr1@gwdg.de> and Frank Bretz <bretz@bioinf.uni-hannover.de>
Date of publication
None
Maintainer
Jobst Landgrebe <jlandgr1@gwdg.de>
License
GPL (>= 2)
Version
1.46.0
URLs

View on Bioconductor

Man pages

analyseMA
ANALYSIS OF FACTORIAL MICROARRAY EXPERIMENTS
cinfo
Vector indexing the matrix cmat
cinfoB.AB
Vector indexing the matrix cmatB.AB
cmat
Contrast matrix describing the experimental questions
cmatB.AB
Contrast matrix describing the experimental questions
core
Internal function of analyseMA
data.3x2
3x2 microarray data
designMA
DESIGN OF FACTORIAL MICROARRAY EXPERIMENTS
designs.basic
Basic designs for two-colour factorial 3 x 2 microarray data
designs.composite
Composite designs for two-colour factorial 3 x 2 microarray...
id.3x2
A vector of length 30012 containing numeric identifiers of...

Files in this package

daMA/DESCRIPTION
daMA/NAMESPACE
daMA/R
daMA/R/analyseMA.R
daMA/R/designMA.R
daMA/data
daMA/data/cinfo.rda
daMA/data/cinfoB.AB.rda
daMA/data/cmat.rda
daMA/data/cmatB.AB.rda
daMA/data/data.3x2.rda
daMA/data/datalist
daMA/data/designs.basic.rda
daMA/data/designs.composite.rda
daMA/data/id.3x2.rda
daMA/man
daMA/man/analyseMA.Rd
daMA/man/cinfo.Rd
daMA/man/cinfoB.AB.Rd
daMA/man/cmat.Rd
daMA/man/cmatB.AB.Rd
daMA/man/core.Rd
daMA/man/data.3x2.Rd
daMA/man/designMA.Rd
daMA/man/designs.basic.Rd
daMA/man/designs.composite.Rd
daMA/man/id.3x2.Rd