R/data.R

In dasper: Detecting abberant splicing events from RNA-sequencing data

#' Set of example junctions
#'
#' A dataset containing the example junction data for 2 case and 3 control
#' samples outputted from \code{\link{junction_load}}. The junctions have been
#' filtered for only those lying on chromosome 21 or 22.
#'
#' @format
#' [RangedSummarizedExperiment-class][SummarizedExperiment::RangedSummarizedExperiment-class]
#' object from \code{\link{SummarizedExperiment}} detailing the counts,
#' co-ordinates of junctions lying on chromosome 21/22 for 2 example samples and
#' 3 controls: \describe{ \item{assays}{matrix with counts for junctions (rows)
#' and 5 samples (cols)} \item{colData}{example sample metadata}
#' \item{rowRanges}{[GRanges-class][GenomicRanges::GRanges-class] object
#' describing the co-ordinates and strand of each junction} }
#'
#' @source generated using data-raw/junctions_example.R
"junctions_example"