derfinderPlot: Plotting functions for derfinder
Version 1.10.0

This package provides plotting functions for results from the derfinder package.

AuthorLeonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]
Bioconductor views DifferentialExpression RNASeq Sequencing Software Visualization
Date of publicationNone
MaintainerLeonardo Collado-Torres <lcollado@jhu.edu>
LicenseArtistic-2.0
Version1.10.0
URL https://github.com/leekgroup/derfinderPlot
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("derfinderPlot")

Getting started

Package overview
README.md
Introduction to derfinderPlot

Popular man pages

derfinderPlot-package: Plotting functions for derfinder
plotCluster: Plot the coverage information surrounding a region cluster
plotOverview: Plot a karyotype overview of the genome with the identified...
vennRegions: Venn diagram for annotated regions given the genomic state
plotRegionCoverage: Makes plots for every region while summarizing the annotation
See all...

All man pages Function index File listing

Man pages

derfinderPlot-package: Plotting functions for derfinder
plotCluster: Plot the coverage information surrounding a region cluster
plotOverview: Plot a karyotype overview of the genome with the identified...
plotRegionCoverage: Makes plots for every region while summarizing the annotation
vennRegions: Venn diagram for annotated regions given the genomic state

Functions

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/derfinderPlot-package.R
R/plotCluster.R
R/plotOverview.R
R/plotRegionCoverage.R
R/utils.R
R/vennRegions.R
README.md
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/derfinderPlot.R
inst/doc/derfinderPlot.Rmd
inst/doc/derfinderPlot.html
man
man/derfinderPlot-package.Rd
man/plotCluster.Rd
man/plotOverview.Rd
man/plotRegionCoverage.Rd
man/vennRegions.Rd
tests
tests/test-all.R
tests/testthat
tests/testthat/test_adv-plotCluster.R
tests/testthat/test_plotting.R
vignettes
vignettes/derfinderPlot.Rmd
derfinderPlot documentation built on May 20, 2017, 10:43 p.m.

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