dks: The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.

The dks package consists of a set of diagnostic functions for multiple testing methods. The functions can be used to determine if the p-values produced by a multiple testing procedure are correct. These functions are designed to be applied to simulated data. The functions require the entire set of p-values from multiple simulated studies, so that the joint distribution can be evaluated.

Author
Jeffrey T. Leek <jleek@jhsph.edu>
Date of publication
None
Maintainer
Jeffrey T. Leek <jleek@jhsph.edu>
License
GPL
Version
1.20.0

View on Bioconductor

Man pages

cred.set
Calculate a credible set for the posterior distribution on...
dks
Frequentist and Bayesian diagnostic tests for multiple...
dksdata
Simulated null p-values from the uniform distribution.
dks.pvalue
Frequentist diagnostic test for multiple testing p-values.
P
Simulated null p-values from the uniform distribution.
pprob.dist
The posterior distribution for the hyper-parameters of the...
pprob.uniform
Bayesian diagnostic test for multiple testing p-values.

Files in this package

dks/DESCRIPTION
dks/NAMESPACE
dks/R
dks/R/dks.R
dks/build
dks/build/vignette.rds
dks/data
dks/data/dksdata.rda
dks/inst
dks/inst/NEWS
dks/inst/doc
dks/inst/doc/dks.R
dks/inst/doc/dks.Rnw
dks/inst/doc/dks.pdf
dks/man
dks/man/P.Rd
dks/man/cred.set.Rd
dks/man/dks.Rd
dks/man/dks.pvalue.Rd
dks/man/dksdata.Rd
dks/man/pprob.dist.Rd
dks/man/pprob.uniform.Rd
dks/vignettes
dks/vignettes/betas2.pdf
dks/vignettes/dks.Rnw