domainsignatures: Geneset enrichment based on InterPro domain signatures

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Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author
Florian Hahne, Tim Beissbarth
Date of publication
None
Maintainer
Florian Hahne <florian.hahne@novartis.com>
License
Artistic-2.0
Version
1.34.0

View on Bioconductor

Man pages

dataSource
Contructor for annotation object
domainsignatures-package
Geneset enrichment based on InterPro domain signatures.
getKEGGdata
Fetch KEGG annotations and InterPro domains
getKEGGdescription
KEGG description from ID
gseDomain
Geneset enrichment based on InterPro domain signatures
ipDataSource-class
A class to store mapping information between genes, pathways...

Files in this package

domainsignatures/DESCRIPTION
domainsignatures/NAMESPACE
domainsignatures/R
domainsignatures/R/AllClasses.R
domainsignatures/R/compSimilarities.R
domainsignatures/R/dataSource.R
domainsignatures/R/getKEGGdata.R
domainsignatures/R/getKEGGdescription.R
domainsignatures/R/gseDomain.R
domainsignatures/R/methods-ipDataSource.R
domainsignatures/R/resampleGeneLists.R
domainsignatures/R/sage.test.R
domainsignatures/R/sim2Pathway.R
domainsignatures/build
domainsignatures/build/vignette.rds
domainsignatures/inst
domainsignatures/inst/doc
domainsignatures/inst/doc/domainenrichment.R
domainsignatures/inst/doc/domainenrichment.Rnw
domainsignatures/inst/doc/domainenrichment.pdf
domainsignatures/inst/precomp
domainsignatures/inst/precomp/precomp.rda
domainsignatures/man
domainsignatures/man/dataSource.Rd
domainsignatures/man/domainsignatures-package.Rd
domainsignatures/man/getKEGGdata.Rd
domainsignatures/man/getKEGGdescription.Rd
domainsignatures/man/gseDomain.Rd
domainsignatures/man/ipDataSource-class.Rd
domainsignatures/vignettes
domainsignatures/vignettes/Vignette.bib
domainsignatures/vignettes/domainenrichment.Rnw