eisa: Expression data analysis via the Iterative Signature Algorithm

The Iterative Signature Algorithm (ISA) is a biclustering method; it finds correlated blocks (transcription modules) in gene expression (or other tabular) data. The ISA is capable of finding overlapping modules and it is resilient to noise. This package provides a convenient interface to the ISA, using standard BioConductor data structures; and also contains various visualization tools that can be used with other biclustering algorithms.

AuthorGabor Csardi <csardi.gabor@gmail.com>
Date of publicationNone
MaintainerGabor Csardi <csardi.gabor@gmail.com>
LicenseGPL (>= 2)
Version1.26.0

View on Bioconductor

Files in this package

eisa/DESCRIPTION
eisa/NAMESPACE
eisa/R
eisa/R/AllClasses.R eisa/R/AllGenerics.R eisa/R/CHR.R eisa/R/GO.R eisa/R/ISAExpressionSet-methods.R eisa/R/ISAModules-methods.R eisa/R/KEGG.R eisa/R/autil.R eisa/R/autogen.R eisa/R/biclust.R eisa/R/eisa.R eisa/R/enrichment.R eisa/R/generalenrichment.R eisa/R/miRNA.R eisa/R/viz.R eisa/R/zzz.R
eisa/build
eisa/build/vignette.rds
eisa/data
eisa/data/ALLModules.rda
eisa/data/ALLModulesSmall.rda
eisa/inst
eisa/inst/CITATION
eisa/inst/autogen
eisa/inst/autogen/images
eisa/inst/autogen/images/CBG_clip_image001_small.jpg
eisa/inst/autogen/images/colbar.png
eisa/inst/autogen/images/color1.png
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eisa/inst/autogen/images/color2.png
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eisa/inst/autogen/images/color3.png
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eisa/inst/autogen/images/color8.png
eisa/inst/autogen/images/color9.png
eisa/inst/autogen/images/firefox.png
eisa/inst/autogen/images/headerbg.png
eisa/inst/autogen/images/point-hover.png
eisa/inst/autogen/images/point-hover2.png
eisa/inst/autogen/images/sib_logo_home.png
eisa/inst/autogen/images/valid-xhtml11-blue.png
eisa/inst/autogen/images/vcss-blue.png
eisa/inst/autogen/mainlattice.html.in
eisa/inst/autogen/mainlattice.js
eisa/inst/autogen/maintable.html.in
eisa/inst/autogen/maintree.html.in
eisa/inst/autogen/maintree.js
eisa/inst/autogen/mapevents.js
eisa/inst/autogen/module.html.in
eisa/inst/autogen/module.js.in
eisa/inst/autogen/style-lattice.css.in
eisa/inst/autogen/style-mod.css.in
eisa/inst/autogen/style-table.css
eisa/inst/autogen/style.css.in
eisa/inst/doc
eisa/inst/doc/EISA_tutorial.R
eisa/inst/doc/EISA_tutorial.Rnw
eisa/inst/doc/EISA_tutorial.pdf
eisa/man
eisa/man/ALLModules.Rd eisa/man/ISA.CHR.Rd eisa/man/ISA.GO.Rd eisa/man/ISA.KEGG.Rd eisa/man/ISA.Rd eisa/man/ISA.html.Rd eisa/man/ISA.iterate.Rd eisa/man/ISA.miRNA.Rd eisa/man/ISA.normalize.Rd eisa/man/ISA.sweep.Rd eisa/man/ISA.unique.Rd eisa/man/ISA2heatmap.Rd eisa/man/ISAExpressionSet.Rd eisa/man/ISAModules-class.Rd eisa/man/ListHyperGParams-class.Rd eisa/man/ListHyperGResult-class.Rd eisa/man/cond.plot.Rd eisa/man/eisa.biclust.Rd eisa/man/enrichment.Rd eisa/man/exp.plot.Rd eisa/man/gograph.Rd eisa/man/mnplot.Rd eisa/man/overlap.Rd eisa/man/profilePlot.Rd eisa/man/robustness.Rd
eisa/vignettes
eisa/vignettes/EISA.bib
eisa/vignettes/EISA_biclust.pdf
eisa/vignettes/EISA_biclust.vignette
eisa/vignettes/EISA_tutorial.Rnw
eisa/vignettes/ISA_internals.pdf
eisa/vignettes/ISA_internals.vignette
eisa/vignettes/plot-HTMLTable.png
eisa/vignettes/tissues.pdf
eisa/vignettes/tissues.vignette

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