| .onLoad |
Source code
|
| .onUnload |
Source code
|
| ALLModules |
Man page
|
| ALLModulesSmall |
Man page
|
| CHRListHyperGParams |
Man page
|
| CHRListHyperGParams-class |
Man page
|
| CHRListHyperGResult |
Man page
|
| CHRListHyperGResult-class |
Man page
|
| GOListHyperGParams |
Man page
|
| GOListHyperGParams-class |
Man page
|
| GOListHyperGResult |
Man page
|
| GOListHyperGResult-class |
Man page
|
| GeneralListHyperGParams |
Man page
|
| GeneralListHyperGParams-class |
Man page
|
| GeneralListHyperGResult |
Man page
|
| GeneralListHyperGResult-class |
Man page
|
| ISA |
Man page
Source code
|
| ISA2heatmap |
Man page
Source code
|
| ISACHR |
Man page
Source code
|
| ISAEnrichment |
Man page
Source code
|
| ISAExpressionSet |
Man page
|
| ISAExpressionSet-class |
Man page
|
| ISAFilterRobust |
Man page
Source code
|
| ISAGO |
Man page
Source code
|
| ISAHTML |
Man page
Source code
|
| ISAHTMLModules |
Man page
Source code
|
| ISAHTMLTable |
Man page
Source code
|
| ISAIterate |
Man page
Source code
|
| ISAKEGG |
Man page
Source code
|
| ISAModules |
Man page
|
| ISAModules-class |
Man page
|
| ISAModules.to.isa.result |
Source code
|
| ISANormalize |
Man page
Source code
|
| ISARobustness |
Man page
Source code
|
| ISASweep |
Man page
Source code
|
| ISASweepGraph |
Man page
Source code
|
| ISASweepGraphPlot |
Man page
Source code
|
| ISAUnique |
Man page
Source code
|
| ISAmiRNA |
Man page
Source code
|
| ISAmnplot |
Man page
Source code
|
| KEGGListHyperGParams |
Man page
|
| KEGGListHyperGParams-class |
Man page
|
| KEGGListHyperGResult |
Man page
|
| KEGGListHyperGResult-class |
Man page
|
| ListHyperGParams |
Man page
|
| ListHyperGParams-class |
Man page
|
| ListHyperGResult |
Man page
|
| ListHyperGResult-class |
Man page
|
| [,ISAModules,ANY,ANY,ANY-method |
Man page
|
| [,ISAModules,ANY,ANY-method |
Man page
|
| [,ISAModules,ANY-method |
Man page
|
| [[,ISAModules,ANY,ANY-method |
Man page
|
| [[,ISAModules,ANY-method |
Man page
|
| annotate |
Man page
Source code
|
| annotation,ISAModules-method |
Man page
|
| anrichment |
Man page
|
| class:ISAModules |
Man page
|
| coerce,Biclust,ISAModules-method |
Man page
|
| coerce,ISAModules,Biclust-method |
Man page
|
| condGeneIdUniverse,CHRListHyperGResult-method |
Man page
|
| condGeneIdUniverse,GOListHyperGResult-method |
Man page
|
| condGeneIdUniverse,GeneralListHyperGResult-method |
Man page
|
| condGeneIdUniverse,KEGGListHyperGResult-method |
Man page
|
| condGeneIdUniverse,ListHyperGResult-method |
Man page
|
| condGeneIdUniverse,miRNAListHyperGResult-method |
Man page
|
| condPlot |
Man page
Source code
|
| conditional,GOListHyperGParams-method |
Man page
|
| conditional,GOListHyperGResult-method |
Man page
|
| conditional<-,GOListHyperGParams,logical-method |
Man page
|
| convert.miRNA |
Source code
|
| dim,ISAModules-method |
Man page
|
| drive |
Man page
|
| drive,CHRListHyperGParams-method |
Man page
|
| drive,GOListHyperGParams-method |
Man page
|
| drive,GeneralListHyperGParams-method |
Man page
|
| drive,KEGGListHyperGParams-method |
Man page
|
| drive,ListHyperGParams-method |
Man page
|
| drive,miRNAListHyperGParams-method |
Man page
|
| drive<- |
Man page
|
| drive<-,CHRListHyperGParams,logical-method |
Man page
|
| drive<-,GOListHyperGParams,logical-method |
Man page
|
| drive<-,GeneralListHyperGParams,logical-method |
Man page
|
| drive<-,KEGGListHyperGParams,logical-method |
Man page
|
| drive<-,ListHyperGParams,logical-method |
Man page
|
| drive<-,miRNAListHyperGParams,logical-method |
Man page
|
| eisa.get.nm |
Source code
|
| expPlot |
Man page
Source code
|
| expPlotColbar |
Man page
Source code
|
| expPlotCreate |
Man page
Source code
|
| expectedCounts,CHRListHyperGResult-method |
Man page
|
| expectedCounts,GOListHyperGResult-method |
Man page
|
| expectedCounts,GeneralListHyperGResult-method |
Man page
|
| expectedCounts,KEGGListHyperGResult-method |
Man page
|
| expectedCounts,ListHyperGResult-method |
Man page
|
| expectedCounts,miRNAListHyperGResult-method |
Man page
|
| featExprs |
Man page
|
| featExprs,ISAExpressionSet-method |
Man page
|
| featureNames,ISAModules-method |
Man page
|
| featureThreshold |
Man page
|
| featureThreshold,ISAModules-method |
Man page
|
| fix.xtable |
Source code
|
| geneCounts,CHRListHyperGResult-method |
Man page
|
| geneCounts,GOListHyperGResult-method |
Man page
|
| geneCounts,GeneralListHyperGResult-method |
Man page
|
| geneCounts,KEGGListHyperGResult-method |
Man page
|
| geneCounts,ListHyperGResult-method |
Man page
|
| geneCounts,miRNAListHyperGResult-method |
Man page
|
| geneIdUniverse,CHRListHyperGResult-method |
Man page
|
| geneIdUniverse,GOListHyperGResult-method |
Man page
|
| geneIdUniverse,GeneralListHyperGResult-method |
Man page
|
| geneIdUniverse,KEGGListHyperGResult-method |
Man page
|
| geneIdUniverse,ListHyperGResult-method |
Man page
|
| geneIdUniverse,miRNAListHyperGResult-method |
Man page
|
| geneIdsByCategory,CHRListHyperGResult-method |
Man page
|
| geneIdsByCategory,GOListHyperGResult-method |
Man page
|
| geneIdsByCategory,GeneralListHyperGResult-method |
Man page
|
| geneIdsByCategory,KEGGListHyperGResult-method |
Man page
|
| geneIdsByCategory,ListHyperGResult-method |
Man page
|
| geneIdsByCategory,miRNAListHyperGResult-method |
Man page
|
| geneMappedCount,CHRListHyperGResult-method |
Man page
|
| geneMappedCount,GOListHyperGResult-method |
Man page
|
| geneMappedCount,GeneralListHyperGResult-method |
Man page
|
| geneMappedCount,KEGGListHyperGResult-method |
Man page
|
| geneMappedCount,ListHyperGResult-method |
Man page
|
| geneMappedCount,miRNAListHyperGResult-method |
Man page
|
| getFeatureMatrix |
Man page
|
| getFeatureMatrix,ISAModules-method |
Man page
|
| getFeatureNames |
Man page
|
| getFeatureNames,ISAModules-method |
Man page
|
| getFeatureScores |
Man page
|
| getFeatureScores,ISAModules-method |
Man page
|
| getFeatures |
Man page
|
| getFeatures,ISAModules-method |
Man page
|
| getFullFeatureMatrix |
Man page
|
| getFullFeatureMatrix,ISAModules-method |
Man page
|
| getFullSampleMatrix |
Man page
|
| getFullSampleMatrix,ISAModules-method |
Man page
|
| getNoFeatures |
Man page
|
| getNoFeatures,ISAModules-method |
Man page
|
| getNoSamples |
Man page
|
| getNoSamples,ISAModules-method |
Man page
|
| getOrganism |
Man page
|
| getOrganism,ISAModules-method |
Man page
|
| getSampleMatrix |
Man page
|
| getSampleMatrix,ISAModules-method |
Man page
|
| getSampleNames |
Man page
|
| getSampleNames,ISAModules-method |
Man page
|
| getSampleScores |
Man page
|
| getSampleScores,ISAModules-method |
Man page
|
| getSamples |
Man page
|
| getSamples,ISAModules-method |
Man page
|
| gograph |
Man page
Source code
|
| gographPlot |
Man page
Source code
|
| hasNA |
Man page
|
| hasNA,ISAExpressionSet-method |
Man page
|
| hasNA<- |
Man page
|
| hasNA<-,ISAExpressionSet-method |
Man page
|
| html.df |
Source code
|
| htmlReport,CHRListHyperGResult-method |
Man page
|
| htmlReport,GOListHyperGResult-method |
Man page
|
| htmlReport,GeneralListHyperGResult-method |
Man page
|
| htmlReport,KEGGListHyperGResult-method |
Man page
|
| htmlReport,ListHyperGResult-method |
Man page
|
| htmlReport,miRNAListHyperGResult-method |
Man page
|
| hyperGTest,CHRListHyperGParams-method |
Man page
|
| hyperGTest,GOListHyperGParams-method |
Man page
|
| hyperGTest,GeneralListHyperGParams-method |
Man page
|
| hyperGTest,KEGGListHyperGParams-method |
Man page
|
| hyperGTest,ListHyperGParams-method |
Man page
|
| hyperGTest,miRNAListHyperGParams-method |
Man page
|
| isa.ListHyperGTest |
Source code
|
| isa.autogen.create.dirs |
Source code
|
| isa.autogen.module |
Source code
|
| isa.result.to.ISAModules |
Source code
|
| length,ISAModules-method |
Man page
|
| makeValidParams,CHRListHyperGParams-method |
Man page
|
| makeValidParams,GOListHyperGParams-method |
Man page
|
| makeValidParams,GeneralListHyperGParams-method |
Man page
|
| makeValidParams,KEGGListHyperGParams-method |
Man page
|
| makeValidParams,ListHyperGParams-method |
Man page
|
| makeValidParams,miRNAListHyperGParams-method |
Man page
|
| miRNAListHyperGParams |
Man page
|
| miRNAListHyperGParams-class |
Man page
|
| miRNAListHyperGResult |
Man page
|
| miRNAListHyperGResult-class |
Man page
|
| mnplot |
Man page
Source code
|
| oddsRatios,CHRListHyperGResult-method |
Man page
|
| oddsRatios,GOListHyperGResult-method |
Man page
|
| oddsRatios,GeneralListHyperGResult-method |
Man page
|
| oddsRatios,KEGGListHyperGResult-method |
Man page
|
| oddsRatios,ListHyperGResult-method |
Man page
|
| oddsRatios,miRNAListHyperGResult-method |
Man page
|
| ontology,GOListHyperGParams-method |
Man page
|
| ontology,GOListHyperGResult-method |
Man page
|
| ontology<-,GOListHyperGParams,character-method |
Man page
|
| overlap |
Man page
Source code
|
| overlapPlot |
Man page
Source code
|
| pData,ISAModules-method |
Man page
|
| prenormalized |
Man page
|
| prenormalized,ISAExpressionSet-method |
Man page
|
| prenormalized<- |
Man page
|
| prenormalized<-,ISAExpressionSet-method |
Man page
|
| print.ISAexpPlot |
Man page
Source code
|
| profilePlot |
Man page
Source code
|
| pvalues,CHRListHyperGResult-method |
Man page
|
| pvalues,GOListHyperGResult-method |
Man page
|
| pvalues,GeneralListHyperGResult-method |
Man page
|
| pvalues,KEGGListHyperGResult-method |
Man page
|
| pvalues,ListHyperGResult-method |
Man page
|
| pvalues,miRNAListHyperGResult-method |
Man page
|
| runData |
Man page
|
| runData,ISAModules-method |
Man page
|
| sampExprs |
Man page
|
| sampExprs,ISAExpressionSet-method |
Man page
|
| sampleNames,ISAModules-method |
Man page
|
| sampleThreshold |
Man page
|
| sampleThreshold,ISAModules-method |
Man page
|
| seedData |
Man page
|
| seedData,ISAModules-method |
Man page
|
| select.eset |
Source code
|
| sigCategories,CHRListHyperGResult-method |
Man page
|
| sigCategories,GOListHyperGResult-method |
Man page
|
| sigCategories,GeneralListHyperGResult-method |
Man page
|
| sigCategories,KEGGListHyperGResult-method |
Man page
|
| sigCategories,ListHyperGResult-method |
Man page
|
| sigCategories,miRNAListHyperGResult-method |
Man page
|
| summary,CHRListHyperGResult-method |
Man page
|
| summary,GOListHyperGResult-method |
Man page
|
| summary,GeneralListHyperGResult-method |
Man page
|
| summary,KEGGListHyperGResult-method |
Man page
|
| summary,ListHyperGResult-method |
Man page
|
| summary,miRNAListHyperGResult-method |
Man page
|
| universeCounts,CHRListHyperGResult-method |
Man page
|
| universeCounts,GOListHyperGResult-method |
Man page
|
| universeCounts,GeneralListHyperGResult-method |
Man page
|
| universeCounts,KEGGListHyperGResult-method |
Man page
|
| universeCounts,ListHyperGResult-method |
Man page
|
| universeCounts,miRNAListHyperGResult-method |
Man page
|
| universeMappedCount,CHRListHyperGResult-method |
Man page
|
| universeMappedCount,GOListHyperGResult-method |
Man page
|
| universeMappedCount,GeneralListHyperGResult-method |
Man page
|
| universeMappedCount,KEGGListHyperGResult-method |
Man page
|
| universeMappedCount,ListHyperGResult-method |
Man page
|
| universeMappedCount,miRNAListHyperGResult-method |
Man page
|
