Man pages for eisa
Expression data analysis via the Iterative Signature Algorithm
| ALLModules | ISA transcription modules for the ALL data |
| cond.plot | Plot sample scores of a transcription module |
| eisa.biclust | Convert ISA modules to a Biclust object, or the opposite |
| enrichment | Enrichment analysis for transcription modules, based on... |
| exp.plot | Expression matrix plots for ISA modules |
| gograph | Plot part of the Gene Ontology hierarchy |
| ISA | Iterative Signature Algorithm on Gene Expression data |
| ISA2heatmap | Heatmap of a transcription module |
| ISA.CHR | Calculate chromosome enrichment for transcription modules |
| ISAExpressionSet | Expression Set, normalized for using with ISA |
| ISA.GO | Calculate Gene Ontology enrichment for transcription modules |
| ISA.html | Create HTML summary pages from the result of modular analysis |
| ISA.iterate | Perform the Iterative Signature Algorithm |
| ISA.KEGG | Calculate KEGG Pathway enrichment for transcription modules |
| ISA.miRNA | Calculate (predicted) miRNA target enrichment for... |
| ISAModules-class | A set of ISA modules |
| ISA.normalize | Normalize expression data for the Iterative Signature... |
| ISA.sweep | Create an ISA module tree |
| ISA.unique | Remove duplicated ISA modules |
| ListHyperGParams-class | Classes for quick GO/KEGG/CHR/miRNA target or other... |
| ListHyperGResult-class | Classes for quick GO/KEGG/CHR/miRNA target or other... |
| mnplot | Plot group means against each other, for an ISA module |
| overlap | Overlap of ISA biclusters |
| profilePlot | Profile plots for ISA biclusters |
| robustness | Robustness of ISA biclusters |
