| .bayesMixModel |
Source code
|
| .calculateCrossCorrelation |
Source code
|
| .getAlignmentQuality |
Source code
|
| .integrateData |
Source code
|
| .matchProbeToPromoter |
Source code
|
| .mlMixModel |
Source code
|
| .normalize |
Source code
|
| .normalize.quantile |
Source code
|
| .normalize.scale |
Source code
|
| .normalize.scaleMedianRegion |
Source code
|
| .normalize.tmm |
Source code
|
| .normalizeChIP |
Source code
|
| .plotChains |
Source code
|
| .plotClassification |
Source code
|
| .plotComponents |
Source code
|
| .sampleAllocations |
Source code
|
| .sampleAlpha |
Source code
|
| .sampleComponentParameters |
Source code
|
| .sampleMixture |
Source code
|
| .sampleMixtureTDP |
Source code
|
| .sampleShape |
Source code
|
| .summarizeReads |
Source code
|
| ChIPseqSet |
Man page
|
| ChIPseqSet,matrix,GRanges-method |
Man page
|
| ChIPseqSet,matrix,GRangesList-method |
Man page
|
| ChIPseqSet-class |
Man page
|
| MixModel-class |
Man page
|
| MixModelBayes-class |
Man page
|
| MixModelML-class |
Man page
|
| MixtureComponent-class |
Man page
|
| acceptanceRate |
Man page
|
| acceptanceRate,MixModelBayes-method |
Man page
|
| as.data.frame,MixModel-method |
Man page
|
| bayesMixModel |
Man page
|
| bayesMixModel,numeric-method |
Man page
|
| calculateCrossCorrelation |
Man page
|
| calculateCrossCorrelation,GRanges-method |
Man page
|
| chains |
Man page
|
| chains,MixModelBayes-method |
Man page
|
| chipVals |
Man page
|
| chipVals,ChIPseqSet-method |
Man page
|
| chipVals<- |
Man page
|
| chipVals<-,ChIPseqSet,matrix-method |
Man page
|
| classification |
Man page
|
| classification,MixModel,character-method |
Man page
|
| classification,MixModel,missing-method |
Man page
|
| components |
Man page
|
| components,MixModel-method |
Man page
|
| convergence |
Man page
|
| convergence,MixModelML-method |
Man page
|
| cpm |
Man page
|
| cpm,ChIPseqSet-method |
Man page
|
| dim,MixModel-method |
Man page
|
| eSet |
Man page
|
| fpkm |
Man page
|
| getAlignmentQuality |
Man page
|
| getAlignmentQuality,character-method |
Man page
|
| integrateData |
Man page
|
| integrateData,ExpressionSet,ChIPseqSet,character,character-metho |
Man page
|
| integrateData,ExpressionSet,ChIPseqSet,character,missing-method |
Man page
|
| integrateData,ExpressionSetIllumina,ChIPseqSet,character,charact |
Man page
|
| integrateData,ExpressionSetIllumina,ChIPseqSet,character,missing |
Man page
|
| length,MixModel-method |
Man page
|
| listClassificationMethods |
Man page
|
| listClassificationMethods,MixModel-method |
Man page
|
| mappedReads |
Man page
|
| matchProbeToPromoter |
Man page
|
| matchProbeToPromoter,list,data.frame-method |
Man page
|
| mlMixModel |
Man page
|
| mlMixModel,numeric-method |
Man page
|
| mmData |
Man page
|
| mmData,MixModel-method |
Man page
|
| normalize |
Man page
|
| normalize,ChIPseqSet-method |
Man page
|
| normalize,ExpressionSet-method |
Man page
|
| normalizeChIP |
Man page
|
| normalizeChIP,ChIPseqSet,character-method |
Man page
|
| plotChains |
Man page
|
| plotChains,MixModelBayes-method |
Man page
|
| plotClassification |
Man page
|
| plotClassification,MixModel-method |
Man page
|
| plotComponents |
Man page
|
| plotComponents,MixModel-method |
Man page
|
| show,MixModel-method |
Man page
|
| show,MixtureComponent-method |
Man page
|
| summarizeReads |
Man page
|
| summarizeReads,GRangesList,GRanges,character-method |
Man page
|
| summarizeReads,GRangesList,GRanges,missing-method |
Man page
|
| summarizeReads,GRangesList,GRangesList,character-method |
Man page
|
| summarizeReads,GRangesList,GRangesList,missing-method |
Man page
|
| summary,MixModel-method |
Man page
|
| summary,MixModelBayes-method |
Man page
|
| transToTSS |
Man page
|
| weights,MixModel-method |
Man page
|
