Man pages for epigenomix
Epigenetic and gene transcription data normalization and integration with mixture models

bayesMixModelFits a Bayesian mixture model using Markov Chain Monte Carlo...
calculateCrossCorrelationCalculate the cross correlation for a given GRanges object.
ChIPseqSet-classClass '"ChIPseqSet"'
eSetExample gene expression data set.
fpkmExample RNA-seq data set.
getAlignmentQualityCalculation of basic alignments statistics
integrateDataCalculates a normalized correlation score from ChIP-seq and...
mappedReadsMapped reads obtained from a anti-histone ChIP-seq...
matchProbeToPromoterA function assigning promoter regions to given probe IDs.
MixModelBayes-classClass '"MixModelBayes"'
MixModel-classClass '"MixModel"'
MixModelML-classClass '"MixModelML"'
MixtureComponent-classClass '"MixtureComponent"'
mlMixModelFits a mixture model using the maximum likelihood principle.
normalizeNormalization of ChIP-seq and other count data
normalizeChIPNormalization of ChIP-seq count data. (deprecated)
plotChainsProduces trace plots for a Bayesian mixture model
plotClassificationPlot classification obtained from a mixture model.
plotComponentsPlots the mixture density together with the densities of all...
summarizeReadsCount reads lying within given regions.
transToTSSA data frame with Ensemble transcript IDs and transcriptional...
epigenomix documentation built on May 31, 2017, 11:06 a.m.