SingleRepReport: Final report for single group of regions
In esATAC: An Easy-to-use Systematic pipeline for ATACseq data analysis

Description Usage Arguments Details Value Author(s) See Also

When user call all steps in the pipeline, the final report can be generated.

atacSingleRepReport(prevStep, htmlOutput = NULL, ...)

## S4 method for signature 'Step'
atacSingleRepReport(prevStep, htmlOutput = NULL, ...)

`prevStep`	`Step-class` object scalar. Any steps object in this package is acceptable when the pipeline is ready.
`htmlOutput`	`Character` scalar. HTML report file directory Default: NULL ("Report.html")
`...`	Additional arguments, currently unused.

The report is HTML format. All link in HTML file is the relative directory in report step folder and other step folder If user want to move HTML file and keep all link access available, they should move the whole pipeline folder at the same time.

An invisible ATACProc-class object (Step-class based) scalar for downstream analysis.

Zheng Wei

atacPipe

esATAC documentation built on Nov. 8, 2020, 6:58 p.m.