Description Usage Arguments Value Examples
View source: R/microAnnotate.R
Annotates given genera as harmful or harmless based on either our manually curated, harmful Genus-Species table in data harmGenera
of this package or user defined table.
1 | microAnnotate(microbe, species = TRUE, annotated.micro = NULL)
|
microbe |
a genus list to be annotated; a Genus-Species data frame which represents the genera and the included corresponding species is recommended to be provided by users for the more accurate annotations, see |
species |
logical, specifying if the species are provided in the |
annotated.micro |
the annotated genera which are used for the annotation of |
The annotated genera.
1 2 3 4 5 6 7 8 9 | #load the genera to be annotated
library(eudysbiome)
data(diffGenera)
#load the curated Genus-Species annotation table
data(harmGenera)
microAnnotate(microbe = diffGenera, species = TRUE,
annotated.micro = harmGenera)
|
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