fdrame: FDR adjustments of Microarray Experiments (FDR-AME)

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This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author
Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli
Date of publication
None
Maintainer
Effi Kenigsberg <effiken.fdrame@gmail.com>
License
GPL (>= 2)
Version
1.46.0

View on Bioconductor

Man pages

design
Experimental design
exp.arr
Normalized Expression Array
fdrgui
fdr.gui
fdr-internal
Internal Functions in the Fdr Package
fdrma
fdr.ma

Files in this package

fdrame/DESCRIPTION
fdrame/NAMESPACE
fdrame/R
fdrame/R/fdr.R
fdrame/R/fdrgui.R
fdrame/build
fdrame/build/vignette.rds
fdrame/data
fdrame/data/design.rda
fdrame/data/exp.arr.rda
fdrame/inst
fdrame/inst/doc
fdrame/inst/doc/fdrame.Rnw
fdrame/inst/doc/fdrame.pdf
fdrame/man
fdrame/man/design.Rd
fdrame/man/exp.arr.Rd
fdrame/man/fdr-internal.Rd
fdrame/man/fdrgui.Rd
fdrame/man/fdrma.Rd
fdrame/src
fdrame/src/fdr.c
fdrame/vignettes
fdrame/vignettes/fdrame.Rnw