ffpe: Quality assessment and control for FFPE microarray expression data

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

AuthorLevi Waldron
Date of publicationNone
MaintainerLevi Waldron <levi.waldron@hunter.cuny.edu>
LicenseGPL (>2)
Version1.18.0

View on Bioconductor

Functions

CATplot Man page
ffpe Man page
ffpe-package Man page
sampleQC Man page
sampleQC,AffyBatch-method Man page
sampleQC,LumiBatch-method Man page
sampleQC,matrix-method Man page
sampleQC-method Man page
sortedIqrPlot Man page
sortedIqrPlot,AffyBatch-method Man page
sortedIqrPlot,LumiBatch-method Man page
sortedIqrPlot,matrix-method Man page

Files

ffpe/DESCRIPTION
ffpe/NAMESPACE
ffpe/R
ffpe/R/CATplot.R ffpe/R/sampleQC.R ffpe/R/sortedIqrPlot.R
ffpe/build
ffpe/build/vignette.rds
ffpe/inst
ffpe/inst/CITATION
ffpe/inst/doc
ffpe/inst/doc/ffpe.R
ffpe/inst/doc/ffpe.Rnw
ffpe/inst/doc/ffpe.pdf
ffpe/man
ffpe/man/CATplot.Rd ffpe/man/ffpe-package.Rd ffpe/man/sampleQC.Rd ffpe/man/sortedIqrPlot.Rd
ffpe/vignettes
ffpe/vignettes/ffpe.Rnw
ffpe/vignettes/ffpe.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.