ffpe: Quality assessment and control for FFPE microarray expression data

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("ffpe")
AuthorLevi Waldron
Bioconductor views GeneExpression Microarray QualityControl
Date of publicationNone
MaintainerLevi Waldron <levi.waldron@hunter.cuny.edu>
LicenseGPL (>2)
Version1.20.0

View on Bioconductor

Functions

CATplot Man page
ffpe Man page
ffpe-package Man page
sampleQC Man page
sampleQC,AffyBatch-method Man page
sampleQC,LumiBatch-method Man page
sampleQC,matrix-method Man page
sampleQC-method Man page
sortedIqrPlot Man page
sortedIqrPlot,AffyBatch-method Man page
sortedIqrPlot,LumiBatch-method Man page
sortedIqrPlot,matrix-method Man page

Files

DESCRIPTION
NAMESPACE
R
R/CATplot.R R/sampleQC.R R/sortedIqrPlot.R
build
build/vignette.rds
inst
inst/CITATION
inst/doc
inst/doc/ffpe.R
inst/doc/ffpe.Rnw
inst/doc/ffpe.pdf
man
man/CATplot.Rd man/ffpe-package.Rd man/sampleQC.Rd man/sortedIqrPlot.Rd
vignettes
vignettes/ffpe.Rnw
vignettes/ffpe.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.