ffpe: Quality assessment and control for FFPE microarray expression data

Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).

Author
Levi Waldron
Date of publication
None
Maintainer
Levi Waldron <levi.waldron@hunter.cuny.edu>
License
GPL (>2)
Version
1.18.0

View on Bioconductor

Man pages

CATplot
Make a Concordance at the Top plot.
ffpe-package
Quality assessment and control for FFPE microarray expression...
sampleQC
Sample quality control for FFPE expression data
sortedIqrPlot
Minimal box plot of samples, which get ordered optionally by...

Files in this package

ffpe/DESCRIPTION
ffpe/NAMESPACE
ffpe/R
ffpe/R/CATplot.R
ffpe/R/sampleQC.R
ffpe/R/sortedIqrPlot.R
ffpe/build
ffpe/build/vignette.rds
ffpe/inst
ffpe/inst/CITATION
ffpe/inst/doc
ffpe/inst/doc/ffpe.R
ffpe/inst/doc/ffpe.Rnw
ffpe/inst/doc/ffpe.pdf
ffpe/man
ffpe/man/CATplot.Rd
ffpe/man/ffpe-package.Rd
ffpe/man/sampleQC.Rd
ffpe/man/sortedIqrPlot.Rd
ffpe/vignettes
ffpe/vignettes/ffpe.Rnw
ffpe/vignettes/ffpe.bib